| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,860,691 – 13,860,796 |
| Length | 105 |
| Max. P | 0.862404 |
| Location | 13,860,691 – 13,860,796 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 88.31 |
| Mean single sequence MFE | -26.76 |
| Consensus MFE | -23.87 |
| Energy contribution | -23.85 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.862404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13860691 105 - 23771897 -A-------AGCGAACUUCUGCAGCUU--UGGUUAAUGUUUUAAUAUGCCUCUGGCAACUAUUAAGCGCACUUGAAAAGCUGAACGUUAAAUGCCAGGCGCAUAUUAAACAUCAA -.-------.(((......))).....--......((((((.(((((((.(((((((....(((((....)))))..(((.....)))...))))))).)))))))))))))... ( -26.50) >DroPse_CAF1 24219 113 - 1 -AAAUGCUUGGCGAAAUCCUGCGGCUCCCGGGUUAAUGUUUUAAUAUGCCUCGGGC-ACUAUUAGGCGCACUUGAAAAGCUGAACAUUAAAUGCCAGUCGCGUAUUAAACAUCCA -..((((((((((....((((.(....)))))((((((((((((((((((...)))-).)))))(((...........)))))))))))).))))))..))))............ ( -28.00) >DroSec_CAF1 21952 105 - 1 -A-------AGCGAACUUCUGCAGCUU--UGGUUAAUGUUUUAAUAUGCCUCUGGCAACUAUUAAGCGCACUUGAAGAGCUGAACGUUAAAUGCCAGGCGCAUAUUAAACAUCAA -.-------.(((......))).....--......((((((.(((((((.(((((((.((.(((((....)))))))(((.....)))...))))))).)))))))))))))... ( -26.80) >DroSim_CAF1 12824 105 - 1 -A-------AGCGAACUUCUGCAGCUU--UGGUUAAUGUUUUAAUAUGCCUCUGGCAACUAUUAAGCGCACUUGAAGAGCUGAACGUUAAAUGCCAGGCGCAUAUUAAACAUCAA -.-------.(((......))).....--......((((((.(((((((.(((((((.((.(((((....)))))))(((.....)))...))))))).)))))))))))))... ( -26.80) >DroEre_CAF1 28286 105 - 1 -A-------AGCGAACUUCUGCAGCCU--UGGUUAAUGUUUUAAUAUGCCUCUGGCAACUAUUAAGCGUACUUGAAAAGCUGAAUGUUAAAUGCCAGGCGCAUAUUAAACAUCAA -.-------.(((......)))(((..--..))).((((((.(((((((.(((((((....(((((....)))))..(((.....)))...))))))).)))))))))))))... ( -28.00) >DroAna_CAF1 22834 106 - 1 CA-------GGCGAAAGUCUGCAGCUU--UGGUUAAUGUUUUAAUAUGCCUCCGGCAACUAUUAAGCCCUCUCGAAAAGCUGAAUGUUAAAUACCCGCCGCAUAUUAAGCAUCAA ((-------(((....)))))((((((--(.........(((((((((((...))))..))))))).........))))))).(((((.((((.........)))).)))))... ( -24.47) >consensus _A_______AGCGAACUUCUGCAGCUU__UGGUUAAUGUUUUAAUAUGCCUCUGGCAACUAUUAAGCGCACUUGAAAAGCUGAACGUUAAAUGCCAGGCGCAUAUUAAACAUCAA ..........(((......)))((((....)))).((((((.(((((((..((((((.......(((...........)))..........))))))..)))))))))))))... (-23.87 = -23.85 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:02 2006