Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,481,368 – 1,481,584 |
Length | 216 |
Max. P | 0.979834 |
Location | 1,481,368 – 1,481,485 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 76.81 |
Mean single sequence MFE | -51.68 |
Consensus MFE | -28.13 |
Energy contribution | -27.80 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.50 |
Mean z-score | -1.65 |
Structure conservation index | 0.54 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573944 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1481368 117 + 23771897 GGCCAGAAGGGCGGGCGGCGGAAGAGUGGGCACUACCGCCUGUAGAGGUUGCAGGCCAGCAGGAACCCCAAGCAAACUGGGAGCCACCGGAGUUGGUGCCUGGAAUAUUCCGGGCGG .(((((..((((.((((((((...(((....))).)))))(((((...))))).))).)).((...((((.......))))..)).))....)))))(((((((....))))))).. ( -48.10) >DroPse_CAF1 167605 117 + 1 GGCCAGCAGAGCAGGCGGCGGCAGUGACGGAACGACGGCCUGCAGAGGCUGGAGUCCCGCGGGCACGCCCAGGAGACUGGGCGUCACUGGGGUCGGAGCCUGGAAGAUUCCAGGAGG ..(((((...((((((.(((............)).).))))))....))))).(.(((.(((..((((((((....))))))))..)))))).)....((((((....))))))... ( -62.90) >DroWil_CAF1 131039 117 + 1 GGCCAGCAGGGCAGGCGGCGGCAAUGUGGGAGCCACACUUUGCAGUGUGGGCAAACCUGUGGGAACGCCUAACAAACUGGGAGCCACUGCUGUUGGUGGCUGGAAAAUGCCAGGCGG .(((((((..((((..(((.....(((((...)))))..((.((((.(((((...((....))...)))))....)))).))))).)))))))))))(.((((......)))).).. ( -46.90) >DroYak_CAF1 133928 117 + 1 GGCCAGAAGAGCUGGCGGCGGAAGAGUAGGCACCACCGCCUGUAGAGGUUGCAGGCCAGCAGGAACUCCAAGCAGACUGGGAGCCACCGGAGUGGGUGCCUGGAAUAUUCCGGGCGG .(((((.....)))))..(((((...((((((((.((((((((((...)))))))).....((..((((.((....)).))))...))))....)))))))).....)))))..... ( -48.20) >DroAna_CAF1 135513 117 + 1 GGCCAGGAGGGCGGGCGGAGGCAGAGCCGGAGCGACAGGUUGAAGAGGUUGAAGUCCAGCUGGGACGCCCAACAGACUGGGUGCCACGGCGGAGGGUGCUUGGAAGAUUCCCGGAGG ..((.(((((((..((....))...))).(((((.(((.((....)).)))...(((.((((((.((((((......)))))))).)))))))...)))))......)))).))... ( -41.10) >DroPer_CAF1 170235 117 + 1 GGCCAGCAGAGCAGGCGGCGGCAGUGACGGAACGACGGCCUGCAGAGGCUGGAGUCCCGCGGGCACGCCCAGGAGACUGGGCGUCACUGGGGUCGGAGCCUGGAAGAUUCCAGGAGG ..(((((...((((((.(((............)).).))))))....))))).(.(((.(((..((((((((....))))))))..)))))).)....((((((....))))))... ( -62.90) >consensus GGCCAGCAGAGCAGGCGGCGGCAGAGUCGGAACGACAGCCUGCAGAGGUUGCAGUCCAGCGGGAACGCCCAGCAGACUGGGAGCCACUGGGGUCGGUGCCUGGAAGAUUCCAGGAGG .(((.(.....).)))(((......(..(((....(.((((....)))).)...)))..)......((((((....))))))))).((((((((...........)))))))).... (-28.13 = -27.80 + -0.33)
Location | 1,481,408 – 1,481,507 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 79.04 |
Mean single sequence MFE | -43.54 |
Consensus MFE | -20.93 |
Energy contribution | -20.93 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.32 |
Mean z-score | -2.06 |
Structure conservation index | 0.48 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.533327 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1481408 99 + 23771897 UGUAGAGGUUGCAGGCCAGCAGGAACCCCAAGCAAACUGGGAGCCACCGGAGUUGGUGCCUGGAAUAUUCCGGGCGGCAGAAGAGC------GGGAGCGGCUUGA- ...........((((((.((.((...((((.......))))..)).(((...(((.((((((((....)))))))).))).....)------))..)))))))).- ( -39.70) >DroPse_CAF1 167645 106 + 1 UGCAGAGGCUGGAGUCCCGCGGGCACGCCCAGGAGACUGGGCGUCACUGGGGUCGGAGCCUGGAAGAUUCCAGGAGGAAGCAGAGCCGCCACAGGAGCGGCUGGCA .((....(((...(.(((.(((..((((((((....))))))))..)))))).)....((((((....))))))....)))..(((((((....).)))))).)). ( -54.70) >DroSim_CAF1 125769 99 + 1 UGUAGAGGUUGCAGGCCAGCAGGAACUCCAAGCAAACUGGGAGCCACGGGAGUUGGUGCCUGGAAUAUUCCGGGCGGCAGAAGAGC------AGGAGCGGCUUGG- ...........((((((.((.....((((.((....)).))))((.......(((.((((((((....)))))))).)))......------.)).)))))))).- ( -35.34) >DroYak_CAF1 133968 99 + 1 UGUAGAGGUUGCAGGCCAGCAGGAACUCCAAGCAGACUGGGAGCCACCGGAGUGGGUGCCUGGAAUAUUCCGGGCGGAAGAAGAGC------AGGAGCGGCUUGA- ...........((((((.((.((....))..((...((((......))))......((((((((....))))))))........))------....)))))))).- ( -34.30) >DroAna_CAF1 135553 103 + 1 UGAAGAGGUUGAAGUCCAGCUGGGACGCCCAACAGACUGGGUGCCACGGCGGAGGGUGCUUGGAAGAUUCCCGGAGGAAGAAGAGCCGC---CGGAGCGGCCUGUA ...(.((((((...(((.((((((.((((((......)))))))).))))....(((((((......((((....))))...))).)))---)))).)))))).). ( -41.20) >DroPer_CAF1 170275 106 + 1 UGCAGAGGCUGGAGUCCCGCGGGCACGCCCAGGAGACUGGGCGUCACUGGGGUCGGAGCCUGGAAGAUUCCAGGAGGAAGCAGAGCCGCCACGGGAGCGGCUGGCA (((..(((((...(.(((.(((..((((((((....))))))))..)))))).)..)))))......((((....)))))))..((((((.(....).))).))). ( -56.00) >consensus UGUAGAGGUUGCAGGCCAGCAGGAACGCCAAGCAGACUGGGAGCCACCGGAGUCGGUGCCUGGAAGAUUCCGGGAGGAAGAAGAGC______AGGAGCGGCUUGA_ .....((((((...(((.((.((..((((.((....)).))))...))...)).))).((((((....)))))).......................))))))... (-20.93 = -20.93 + 0.00)
Location | 1,481,445 – 1,481,544 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 70.92 |
Mean single sequence MFE | -49.43 |
Consensus MFE | -20.48 |
Energy contribution | -22.15 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.29 |
Mean z-score | -1.97 |
Structure conservation index | 0.41 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.847947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1481445 99 + 23771897 UGGGAGCCACCGGAGUUGGUGCCUGGAAUAUUCCGGGCGGCAGAAGAGC------------GGGAGCGGCUUGA---GCCAAAGCAGGAUGCAGAGCAGCCGCGGAUGUGGCUG ....((((((.....(((.((((((((....)))))))).)))....((------------((..(((((....---)))...((.....))...))..))))....)))))). ( -43.10) >DroVir_CAF1 137270 108 + 1 UGGGUCCGCCAAGACCGGGCGCCUGGUAUAUGCCAGGCGGCAGCAGUGC------AGCAGCGGGUGCUGUUGGCACCGCCAGAGCAGGAUGCAAGGCAGCCGCCGAGGUGGCCG ..((((......))))((.((((((((....))).((((((....((((------((((((....)))))).)))).(((...((.....))..))).)))))).))))).)). ( -54.50) >DroPse_CAF1 167682 108 + 1 UGGGCGUCACUGGGGUCGGAGCCUGGAAGAUUCCAGGAGGAAGCAGAGC------CGCCACAGGAGCGGCUGGCAUGGCCAAGCCCGGAUUGAGGGCAGCCGCCGAUGUGGCAG ..(((....(((...((....((((((....)))))).))...))).))------)((((((...(((((((((...)))..((((.......))))))))))...)))))).. ( -52.00) >DroWil_CAF1 131116 114 + 1 UGGGAGCCACUGCUGUUGGUGGCUGGAAAAUGCCAGGCGGGAGCAGUGCAGCAGCCGUUACCGGAGCUGUGGGCACGGCCAGAACCGGAUGAAGAGCAGCCGCUGAUGUGGCUG ....((((((....((..(((((((.....((((..((....))...(((((..(((....))).))))).))))(((......))).........)))))))..)))))))). ( -48.30) >DroAna_CAF1 135590 105 + 1 UGGGUGCCACGGCGGAGGGUGCUUGGAAGAUUCCCGGAGGAAGAAGAGC------CGC---CGGAGCGGCCUGUACUGCGAGGGCGGGAUGCAAGGCAGCCGCUGUGGUUGCCG ..((((((((((((((((.((((((((....)))(((.((........)------).)---))))))).)))...((((....((.....))...))))))))))))).)))). ( -47.40) >DroPer_CAF1 170312 108 + 1 UGGGCGUCACUGGGGUCGGAGCCUGGAAGAUUCCAGGAGGAAGCAGAGC------CGCCACGGGAGCGGCUGGCAUGGCCAAGCCCGGAUUGAGGGCAGCCGCCGAUGUGGCAG ..(((....(((...((....((((((....)))))).))...))).))------)((((((...(((((((((...)))..((((.......))))))))))...)))))).. ( -51.30) >consensus UGGGAGCCACUGGGGUCGGUGCCUGGAAGAUUCCAGGAGGAAGCAGAGC______CGC_ACGGGAGCGGCUGGCACGGCCAAAGCCGGAUGCAGGGCAGCCGCCGAUGUGGCAG .....(((((...........((((((....))))))............................(((((((.(....((......))......).)))))))....))))).. (-20.48 = -22.15 + 1.67)
Location | 1,481,445 – 1,481,544 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 70.92 |
Mean single sequence MFE | -42.93 |
Consensus MFE | -14.64 |
Energy contribution | -17.20 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.14 |
Mean z-score | -2.56 |
Structure conservation index | 0.34 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.979834 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1481445 99 - 23771897 CAGCCACAUCCGCGGCUGCUCUGCAUCCUGCUUUGGC---UCAAGCCGCUCCC------------GCUCUUCUGCCGCCCGGAAUAUUCCAGGCACCAACUCCGGUGGCUCCCA .((((((....(((((((((..((.....))...)))---...))))))....------------((......)).(((.(((....))).)))..........)))))).... ( -34.70) >DroVir_CAF1 137270 108 - 1 CGGCCACCUCGGCGGCUGCCUUGCAUCCUGCUCUGGCGGUGCCAACAGCACCCGCUGCU------GCACUGCUGCCGCCUGGCAUAUACCAGGCGCCCGGUCUUGGCGGACCCA .(((......((((((.(((..((.....))...)))(((((...((((....))))..------)))))))))))((((((......))))))))).(((((....))))).. ( -52.60) >DroPse_CAF1 167682 108 - 1 CUGCCACAUCGGCGGCUGCCCUCAAUCCGGGCUUGGCCAUGCCAGCCGCUCCUGUGGCG------GCUCUGCUUCCUCCUGGAAUCUUCCAGGCUCCGACCCCAGUGACGCCCA ..((((((..(((((((((((.......))))..(((...))))))))))..))))))(------((.(((..((..((((((....))))))....))...)))....))).. ( -48.00) >DroWil_CAF1 131116 114 - 1 CAGCCACAUCAGCGGCUGCUCUUCAUCCGGUUCUGGCCGUGCCCACAGCUCCGGUAACGGCUGCUGCACUGCUCCCGCCUGGCAUUUUCCAGCCACCAACAGCAGUGGCUCCCA .((((((..(((((((((........((((..(((..........)))..))))...)))))))))...((((......((((........)))).....)))))))))).... ( -41.40) >DroAna_CAF1 135590 105 - 1 CGGCAACCACAGCGGCUGCCUUGCAUCCCGCCCUCGCAGUACAGGCCGCUCCG---GCG------GCUCUUCUUCCUCCGGGAAUCUUCCAAGCACCCUCCGCCGUGGCACCCA .((...((((.((((.(((.(((..((((((....))......((((((....---)))------)))...........))))......))))))....)))).))))...)). ( -35.20) >DroPer_CAF1 170312 108 - 1 CUGCCACAUCGGCGGCUGCCCUCAAUCCGGGCUUGGCCAUGCCAGCCGCUCCCGUGGCG------GCUCUGCUUCCUCCUGGAAUCUUCCAGGCUCCGACCCCAGUGACGCCCA ..(((((...(((((((((((.......))))..(((...))))))))))...)))))(------((.(((..((..((((((....))))))....))...)))....))).. ( -45.70) >consensus CAGCCACAUCGGCGGCUGCCCUGCAUCCGGCCCUGGCCGUGCCAGCCGCUCCCGU_GCG______GCUCUGCUUCCGCCUGGAAUCUUCCAGGCACCAACCCCAGUGGCACCCA ..(((((....(((((((((..((.....))...)))......))))))............................(((((......)))))...........)))))..... (-14.64 = -17.20 + 2.56)
Location | 1,481,485 – 1,481,584 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 69.88 |
Mean single sequence MFE | -48.55 |
Consensus MFE | -16.51 |
Energy contribution | -16.93 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.32 |
Mean z-score | -1.92 |
Structure conservation index | 0.34 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646333 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1481485 99 - 23771897 GCAGUGGUCACUAAGGUGGGUGCAAUGCCAGUGGUUUCGGCAGCCACAUCCGCGGCUGCUCUGCAUCCUGCUUUGGC---UCAAGCCGCUCCC------------GCUCUUCUG ((((((((..((((((((((((((..(((...)))...(((((((.(....).))))))).))))))).))))))).---....))))))...------------))....... ( -37.20) >DroVir_CAF1 137310 104 - 1 ----UUGCCGCCAAAGUGAACGCCAUGCCCGUGGUGAGUGCGGCCACCUCGGCGGCUGCCUUGCAUCCUGCUCUGGCGGUGCCAACAGCACCCGCUGCU------GCACUGCUG ----..(((((((.(((...((((((....))))))((.((((((.(....).))))))))........))).))))))).....(((((...((....------))..))))) ( -43.90) >DroPse_CAF1 167722 108 - 1 GCAGUGGUCACGAAGGUGGGCAACAUGCCUUUGGUGAAUGCUGCCACAUCGGCGGCUGCCCUCAAUCCGGGCUUGGCCAUGCCAGCCGCUCCUGUGGCG------GCUCUGCUU ((((...((((((((((((....).))))))).))))..(((((((((..(((((((((((.......))))..(((...))))))))))..)))))))------)).)))).. ( -57.80) >DroWil_CAF1 131156 114 - 1 GCCGUGGUGGCCAAAGUGGGUGCCAUGCCAGUGGUAAGUGCAGCCACAUCAGCGGCUGCUCUUCAUCCGGUUCUGGCCGUGCCCACAGCUCCGGUAACGGCUGCUGCACUGCUC ...(..(..(((...(((((..(...((((((((.(((.((((((.(....).)))))).)))...)))...))))).)..))))).((....))...)))..)..)....... ( -52.20) >DroAna_CAF1 135630 105 - 1 GCUGUGGUGGCCAAGGUGGGUGCCAUGCCAGUAGUUUCGGCGGCAACCACAGCGGCUGCCUUGCAUCCCGCCCUCGCAGUACAGGCCGCUCCG---GCG------GCUCUUCUU ((((((((.(((..(((....)))..(((.........)))))).)))))))).(((((...((.....))....)))))...((((((....---)))------)))...... ( -46.40) >DroPer_CAF1 170352 108 - 1 GCAGUGGUCACGAAGGUGGGCAACAUGCCUCUGGUGAAUGCUGCCACAUCGGCGGCUGCCCUCAAUCCGGGCUUGGCCAUGCCAGCCGCUCCCGUGGCG------GCUCUGCUU ((((...((((.(((((((....).))))).).))))..((((((((...(((((((((((.......))))..(((...))))))))))...))))))------)).)))).. ( -53.80) >consensus GCAGUGGUCACCAAGGUGGGCGCCAUGCCAGUGGUGAAUGCAGCCACAUCGGCGGCUGCCCUGCAUCCGGCCCUGGCCGUGCCAGCCGCUCCCGU_GCG______GCUCUGCUU ...((((((((....)))........(((.((((.....((((((.(....).)))))).......)).))...))).......)))))......................... (-16.51 = -16.93 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:48 2006