| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,860,387 – 13,860,491 |
| Length | 104 |
| Max. P | 0.607590 |
| Location | 13,860,387 – 13,860,491 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 81.53 |
| Mean single sequence MFE | -24.33 |
| Consensus MFE | -17.42 |
| Energy contribution | -17.20 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.607590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13860387 104 - 23771897 UGACUCUUGCAAUCGCAGUUGAGCAUCGGACCAAAAGGGACGAUGUAAAAGGACACUCACCCACAUCGACACAGAAAAAAUUC-AUAUAUUUGGCUCUGUUUCAC .......(((....)))(((((((((((..((....))..))))))....((........))...)))))(((((..((((..-....))))...)))))..... ( -25.40) >DroEre_CAF1 28000 99 - 1 UGACUAUUGCCAUCGCAGUUGAGCAUCGGACCAAAAAGCACGAUGUAAAAGGACACAUUCCCACAUCGACACGGAAAAAAACC------CUUGUUUCCAUUUCAA .......(((....)))(((((((((((..(......)..))))))....(((.....)))....)))))..(((((.((...------.)).)))))....... ( -18.80) >DroYak_CAF1 23777 105 - 1 UGACUAUUGCCAGCGCAGUUGAGCAUCGGACCAAAAAGGACGAUGUAAAAGGAGACAUUUCCACAUCGACACGGAAAAAAACGAAAGUAUUUGUCUCUGCUUCGC ............(((.(((...((((((..((.....)).))))))....((((((((((((..........)))))...((....))...)))))))))).))) ( -28.80) >consensus UGACUAUUGCCAUCGCAGUUGAGCAUCGGACCAAAAAGGACGAUGUAAAAGGACACAUUCCCACAUCGACACGGAAAAAAACC_A__UAUUUGUCUCUGUUUCAC (((....(((....)))(((((((((((..(......)..))))))....((........))...)))))...............................))). (-17.42 = -17.20 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:01 2006