Locus 5057

Sequence ID 3L_DroMel_CAF1
Location 13,853,231 – 13,853,328
Length 97
Max. P 0.690294
window8018

overview

Window 8

Location 13,853,231 – 13,853,328
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 92.27
Mean single sequence MFE -19.55
Consensus MFE -15.25
Energy contribution -16.33
Covariance contribution 1.08
Combinations/Pair 1.09
Mean z-score -1.65
Structure conservation index 0.78
SVM decision value 0.33
SVM RNA-class probability 0.690294
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13853231 97 - 23771897
UGAUGCUGCACUUCAGUUUGAUAUAAUCCUUAUACAUUUAUUAAAAAUAAGUGCAGUUGGCCGAAAAGUUCACCACAAACCGAAAAAUUAGGACUUU
....(((((((((...(((((((...............)))))))...))))))))).......(((((((...................))))))) ( -18.57)
>DroSec_CAF1 14672 97 - 1
UGAUGCUGCACUUCAGUUUGAUAUAAUCCUUAUACAUUUAUUAAAAAUAAGUGCAGUUGGCCGAAAAGUCCACCACAAACCGAAAAAUUAGGACUUU
....(((((((((...(((((((...............)))))))...))))))))).......(((((((...................))))))) ( -21.47)
>DroSim_CAF1 5240 97 - 1
UGAUGCUGCACUUCAGUUUGAUAUAAUCCUUAUACAUUUAUUAAAAAUAAGUGCUGUUGGCCGAAAAGUCCACCACAAACCGAAAAAUUAGGACUUU
....(((((((((...(((((((...............)))))))...))))))....)))...(((((((...................))))))) ( -17.17)
>DroEre_CAF1 21257 97 - 1
UGAUGCUGCACUUAAUUCUGAUAUAAUCCUUAUUCAUUUAUUAAAAAUAAGUGCAGUUGGGUGAAAAGCCCACCGCAAGUCGAAAAAUUAGGACUUC
....((((((((((.((.(((((...............))))).)).))))))))))(((((.....)))))....(((((..........))))). ( -24.06)
>DroYak_CAF1 16608 97 - 1
UGAUGCAGCACUUCAGUUUGAUAUAAUCCUUAUACAUUUAUUAAAAAUAAGUGCAACUGGGAGAAAAGCCCACCACAAACCGAGAAAUUAGGACUUU
.......((((((...(((((((...............)))))))...))))))...((((.......)))).......((((....)).))..... ( -16.46)
>consensus
UGAUGCUGCACUUCAGUUUGAUAUAAUCCUUAUACAUUUAUUAAAAAUAAGUGCAGUUGGCCGAAAAGUCCACCACAAACCGAAAAAUUAGGACUUU
....(((((((((...(((((((...............)))))))...))))))))).......(((((((...................))))))) (-15.25 = -16.33 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:58 2006