Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,851,669 – 13,851,780 |
Length | 111 |
Max. P | 0.998710 |
Location | 13,851,669 – 13,851,780 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 91.83 |
Mean single sequence MFE | -38.27 |
Consensus MFE | -35.03 |
Energy contribution | -35.95 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.15 |
Mean z-score | -2.61 |
Structure conservation index | 0.92 |
SVM decision value | 3.20 |
SVM RNA-class probability | 0.998710 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13851669 111 - 23771897 GGUCAAAUUGCGACCAUGGUGGAGGAGAAGGCGCGCUCCCUGCUGCCCCGUCAUCACUUUGCAAGCCUUUCCUACUAUAUUGCCGAAUAUAGUGCGAAAGCAAUGACCAUA (((((..((((((...(((((..((....((((.((.....))))))))..)))))..))))))((.((((.(((((((((....))))))))).))))))..)))))... ( -40.80) >DroVir_CAF1 23303 111 - 1 GGUCAAAUCACGACCAUGGUGGAGGAGAAGGCGCGCUCGCUGCUGCCACGUCAUCAUUUUGCAAGUCUUUCGUAUUAUAUUGCCGAAUAUAGUGUGAAAGCAAUGACCAUA (((((......(((..(((..((((((........))).)).)..))).)))............(.(((((((((((((((....))))))))))))))))..)))))... ( -33.20) >DroPse_CAF1 16063 111 - 1 GGUCAGAUUGCGACCAUGGUGGAGGAGAAGGCCCGCUCUCUGCUGCCCCGUCAUCACUUUGCAAGCCUCUCCUACUAUAUUGCAGAGUAUAGUGGGAAAGCAAUGACCAUA (((((..((((((...(((((..((....(((..((.....)).)))))..)))))..))))))((...((((((((((((....))))))))))))..))..)))))... ( -42.30) >DroWil_CAF1 23429 111 - 1 GGUCAAAUUGCGACCAUGGUUGAGGAGAAGGCACGCUCUCUGCUGCCACGACAUCAUUUUGCAAGCCUUUCAUAUUAUAUUGCCGAAUAUAGUGCGAAAGCAAUGACCAUA (((((..((((((.....((((.((....((((.......)))).)).))))......))))))((.((((.(((((((((....))))))))).))))))..)))))... ( -33.10) >DroMoj_CAF1 18260 111 - 1 GGUCAGAUUGCGACCAUGGUGGAGGAGAAGGCGCGCUCGCUGCUGCCACGACAUCAUUUUGCAAGUCUUUCAUAUUAUAUAGCCGAAUAUAGUGUGAAAGCAAUGACCAUA (((((..((((((..((((((..(.....((((.((.....)))))).)..)))))).))))))(.((((((((((((((......)))))))))))))))..)))))... ( -41.10) >DroAna_CAF1 13901 111 - 1 GGUCAAAUUGCGACCAUGGUGGAGGAGAAGGCUCGCUCGCUGCUGCCACGUCAUCACUUUGCAAGCCUUUCGUACUACAUUGCCGAAUAUAGUGCGAAAGCAAUGACCAUA (((((..((((((...(((((((((((....))).)))((....)).....)))))..))))))((.((((((((((.(((....))).))))))))))))..)))))... ( -39.10) >consensus GGUCAAAUUGCGACCAUGGUGGAGGAGAAGGCGCGCUCGCUGCUGCCACGUCAUCACUUUGCAAGCCUUUCAUACUAUAUUGCCGAAUAUAGUGCGAAAGCAAUGACCAUA (((((..((((((...(((((..(.....((((.((.....)))))).)..)))))..))))))(.(((((((((((((((....))))))))))))))))..)))))... (-35.03 = -35.95 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:57 2006