Locus 5055

Sequence ID 3L_DroMel_CAF1
Location 13,845,673 – 13,845,774
Length 101
Max. P 0.937082
window8016

overview

Window 6

Location 13,845,673 – 13,845,774
Length 101
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 77.61
Mean single sequence MFE -16.13
Consensus MFE -11.30
Energy contribution -11.67
Covariance contribution 0.36
Combinations/Pair 1.20
Mean z-score -1.82
Structure conservation index 0.70
SVM decision value 1.26
SVM RNA-class probability 0.937082
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13845673 101 - 23771897
UACAAAAAUGAGCUACUACAUAGCAAUAGCUAUGGCUAAAAAAACAUCAUCAAAUACGACAACAAAUCUUGGCUGCAAAAGUUUGCAAAGUCAUAAAUUUG
.......((((((((.....))))..((((....))))........))))............(((((..(((((((((....))))..)))))...))))) ( -16.80)
>DroPse_CAF1 9422 82 - 1
UACACAAA---------AUUCAGCGAUGGCUAGAGCCAG-------CCAGC---AACGAGACAAAAACUUGACUGCAAAACUUUGCAAAGUCAUAAAUUUG
........---------.....((..((((....)))).-------...))---.......((((....(((((((((....))))..)))))....)))) ( -16.70)
>DroSec_CAF1 7259 101 - 1
UACAAAAAUGAGCUACUACAUAGCAAUAGCUACGGCUAAAAAAACAUCAUCAAAUAUGACAACAAAUCUUGGCUGCAAAAGUUUGCAUAGUCAUAAAUUUG
..((((.((((((((.....))))..((((....))))........))))....((((((..((.....))..(((((....)))))..))))))..)))) ( -20.20)
>DroEre_CAF1 13420 100 - 1
UACAAAAAUGAGCUACUACAUAGCAAUAGCUAUGGCUAAAAAAACAUCAUCAAAUACGACAACAAAUCUUCGCUGCAA-AGUUUGCAAAGUCAUAAAUUUG
.......((((.((....((((((....)))))).......................................((((.-....)))).))))))....... ( -12.90)
>DroYak_CAF1 8606 101 - 1
UACAAAAAUGAGCUACUACAUGGCAAUAGCUAUGGCUAAAAAAACAUCAUCAAAUACGACAACAAAUCUUCGCUGCAAAAGUUUGCAAAGUCAUAAAUUUG
.......((((.((....((((((....)))))).......................................(((((....))))).))))))....... ( -13.50)
>DroPer_CAF1 1795 82 - 1
UACACAAA---------AUUCAGCGAUGGCUAGAGCCAG-------CCAGC---AACGAGACAAAAACUUGACUGCAAAACUUUGCAAAGUCAUAAAUUUG
........---------.....((..((((....)))).-------...))---.......((((....(((((((((....))))..)))))....)))) ( -16.70)
>consensus
UACAAAAAUGAGCUACUACAUAGCAAUAGCUAUGGCUAAAAAAACAUCAUCAAAUACGACAACAAAUCUUGGCUGCAAAAGUUUGCAAAGUCAUAAAUUUG
..................((((((....))))))............................(((((..(((((((((....))))..)))))...))))) (-11.30 = -11.67 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:56 2006