Locus 5054

Sequence ID 3L_DroMel_CAF1
Location 13,841,574 – 13,841,685
Length 111
Max. P 0.892032
window8015

overview

Window 5

Location 13,841,574 – 13,841,685
Length 111
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -24.62
Consensus MFE -21.87
Energy contribution -21.87
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.89
SVM decision value 0.97
SVM RNA-class probability 0.892032
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13841574 111 - 23771897
GGGUGGUUUAACACAACGUGUCAAAUCAUGGUAUUGGGGACGACCUCUAGUAAGUGCCAAUGUAUUUUUCGUUAAACGUUACCA-AACGAAAACAAAC-CAAAAUACCUAAUA
((.((((((..(((..((((......)))).((((((((.....)))))))).))).........((((((((...........-)))))))).))))-)).....))..... ( -23.70)
>DroPse_CAF1 4827 109 - 1
GGGUGGUUUAACACAACGUGUCAAAUCAUGGUAUUGGGGACGACCUCUAGUAAGUGCCAAUGUAUUUUUCGUUAACUGUUA----AACGAAAACCACCACAAAAAACCAAACA
.((((((((..(((..((((......)))).((((((((.....)))))))).)))............(((((........----)))))))))))))............... ( -27.50)
>DroSec_CAF1 3224 111 - 1
GGGUGGUUUAACACAACGUGUCAAAUCAUGGUAUUGGGGACGACCUCUAGUAAGUGCCAAUGUAUUUUUCGUUAAACGUUACCA-AACGAAAACAAAC-CAAAAUACCUAAUA
((.((((((..(((..((((......)))).((((((((.....)))))))).))).........((((((((...........-)))))))).))))-)).....))..... ( -23.70)
>DroEre_CAF1 9379 110 - 1
GGGUGGUUUAACACAACGUGUCAAAUCAUGGUAUUGGGGACGACCUCUAGUAAGUGCCAAUGUAUUUUUCGUUAAACGUUAACA-AACGAAAACAAAC-CA-AAUACCUAAUA
((.((((((..(((..((((......)))).((((((((.....)))))))).))).........((((((((...........-)))))))).))))-))-....))..... ( -24.40)
>DroYak_CAF1 4570 112 - 1
GGGUGGUUUAACACAACGUGUCAAAUCAUGGUAUUGGGGACGACCUCUAGUAAGUGCCAAUGUAUUUUUCGUUAAACGUUAUCAAAACGAAAACAAAC-CAAAAUACCUAAUA
((.((((((..(((..((((......)))).((((((((.....)))))))).))).........((((((((............)))))))).))))-)).....))..... ( -23.60)
>DroAna_CAF1 4324 106 - 1
GGGUGGUUUAACACAACGUGUCAAAUCAUGGUAUUGGGGACGACCUCUAGUAAGUGCCAAUGUAUUUUUCGUUAAUCGUUA----AACGAAAACAAAC---AAAUACCUAAUA
(((((((((.((((...)))).))))).(((((((((((....)))).....))))))).(((..((((((((........----))))))))...))---)...)))).... ( -24.80)
>consensus
GGGUGGUUUAACACAACGUGUCAAAUCAUGGUAUUGGGGACGACCUCUAGUAAGUGCCAAUGUAUUUUUCGUUAAACGUUA_CA_AACGAAAACAAAC_CAAAAUACCUAAUA
(((((((((.((((...)))).)))))))((((((((((....)))).....)))))).......((((((((............)))))))).............))..... (-21.87 = -21.87 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:55 2006