Locus 5053

Sequence ID 3L_DroMel_CAF1
Location 13,837,818 – 13,837,926
Length 108
Max. P 0.759473
window8014

overview

Window 4

Location 13,837,818 – 13,837,926
Length 108
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 92.01
Mean single sequence MFE -34.14
Consensus MFE -29.32
Energy contribution -28.24
Covariance contribution -1.08
Combinations/Pair 1.17
Mean z-score -1.39
Structure conservation index 0.86
SVM decision value 0.50
SVM RNA-class probability 0.759473
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13837818 108 + 23771897
-UGAUGUUGUUGUGCAACUCAUGGGGCAGUGGCGGCGGAUUCUUGGCUUUCGUUAGCGGUAUUGGUGUUGGCAUUGGUUUUGGCGUCUCUGUUAAAUCGAUGCCCCAUU
-.((.((((.....))))))((((((((.((((((.((((.((.((((...(((((((.......)))))))...))))..)).))))))))))......)))))))). ( -34.20)
>DroVir_CAF1 6812 109 + 1
UUGCUGUUGGUAUGUAGCUCAUGAGGCAGUGGCGGUGGAUUUUUAGCUUUUGUCAGCGGUAUCGGUGUUGGCAUUGGUUUUGGCGUCUCCGUUAAAUCGAUGCCCCAUU
(..(((((..((((.....)))).)))))..).(((((......((((..((((((((.......))))))))..))))..((((((...........))))))))))) ( -32.00)
>DroPse_CAF1 407 109 + 1
CUGAUGUUGUUGUGUAGCUCAUGAGGCAGUGGCGGUGGAUUCUUGGCUCUUGUUAGCGGUAUUGGUGUUGGCAUUGGUUUUGGCGUCUCCGUUAAAUCGAUGCCCCAUU
....(((..((((.(........).))))..)))((((((..(((((....)))))..)).........(((((((((((.((((....))))))))))))))))))). ( -29.60)
>DroGri_CAF1 487 109 + 1
CUGCUGUUGCUAUAUAGCUCAUGAGGCAGUGGCGGUGGAUUUUUAGCUUUUGUCAGCGGUAUCGGUGUUGGCAUUGGUUUUGGCGUCUCCGUUAAAUCGAUGCCCCAUU
((((..(((((.(((.....))).)))))..))))(((......((((..((((((((.......))))))))..))))..((((((...........))))))))).. ( -35.20)
>DroAna_CAF1 903 108 + 1
-UGAUGUUGUUAUGCAGCUCAUGGGGCAGUGGCGGUGGAUUCUUGGCUUUUGUUAGCGGUAUUGGUGUUGGCAUUGGUUUUGGCGUCUCCGUUAAAUCGAUGCCCCAUU
-.((.((((.....))))))((((((((.((((((.((((.((.((((..((((((((.......))))))))..))))..)).))))))))))......)))))))). ( -39.70)
>consensus
_UGAUGUUGUUAUGUAGCUCAUGAGGCAGUGGCGGUGGAUUCUUGGCUUUUGUUAGCGGUAUUGGUGUUGGCAUUGGUUUUGGCGUCUCCGUUAAAUCGAUGCCCCAUU
.....((((.....))))..(((.((((.((((((.((((.((.((((..((((((((.......))))))))..))))..)).))))))))))......)))).))). (-29.32 = -28.24 +  -1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:54 2006