| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,835,302 – 13,835,422 |
| Length | 120 |
| Max. P | 0.741168 |
| Location | 13,835,302 – 13,835,422 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.94 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -23.35 |
| Energy contribution | -23.85 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13835302 120 + 23771897 UAAGCGUUAAUUUCUUCUUGUCUCUACAGCGUAAAUGUUAUUUUUGCAUUUUUUUUUUUAGUGGCAGAGCAGACGUAGAUGUCCUUCUGCCCUAGCAGUUUCAUAAUUCGUUUACCAUUU ((((((............(((....)))(((((((.......)))))...........(((.(((((((..((((....)))).))))))))))))............))))))...... ( -23.10) >DroSec_CAF1 10214 117 + 1 UAAGCGUUAAUUUCUUCUUGUCUCUACAGCGUUAAUGUUAUUUUUGCAUUUU---UUUUAGUGGCAGAGCGGACGUAGAUGUCCUUCUGCCCUAGCAGUUUCAUAAUUCGUUUACCAUUU ((((((............(((....)))((...(((((.......)))))..---...(((.(((((((.(((((....)))))))))))))))))............))))))...... ( -26.50) >DroSim_CAF1 9504 119 + 1 UAAGCGUUAAUUUCUUCUUGUCUCUACAGCGUUAAUGUUAUUUUUGCAUUUUU-UUUUUAGUGGCAGAGCGGACGUAGAUGUCCUUCUGCCCUAGCAGUUUCAUAAUUCGUUUACCAUUU ((((((............(((....)))((...(((((.......)))))...-....(((.(((((((.(((((....)))))))))))))))))............))))))...... ( -26.50) >DroYak_CAF1 9969 120 + 1 UAAGCGUUAAUUUCUUCUUGUCUCUACAGCGUAAAUGUUAUUUUUGCAUUUUUCUUUUUAGUGGCAGAGCAGACGUAGAUGUCCUUCUGCCCUAGCAGUAUCAUAAUUCGUUUACCAUUU ((((((............(((....)))(((((((.......)))))...........(((.(((((((..((((....)))).))))))))))))............))))))...... ( -23.10) >consensus UAAGCGUUAAUUUCUUCUUGUCUCUACAGCGUAAAUGUUAUUUUUGCAUUUUU_UUUUUAGUGGCAGAGCAGACGUAGAUGUCCUUCUGCCCUAGCAGUUUCAUAAUUCGUUUACCAUUU ((((((............(((....)))((...(((((.......)))))........(((.(((((((.(((((....)))))))))))))))))............))))))...... (-23.35 = -23.85 + 0.50)
| Location | 13,835,302 – 13,835,422 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.94 |
| Mean single sequence MFE | -22.08 |
| Consensus MFE | -21.46 |
| Energy contribution | -21.21 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732218 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13835302 120 - 23771897 AAAUGGUAAACGAAUUAUGAAACUGCUAGGGCAGAAGGACAUCUACGUCUGCUCUGCCACUAAAAAAAAAAAUGCAAAAAUAACAUUUACGCUGUAGAGACAAGAAGAAAUUAACGCUUA ......................(((((((((((((.((((......))))..)))))).))).......(((((.........))))).....))))....................... ( -21.30) >DroSec_CAF1 10214 117 - 1 AAAUGGUAAACGAAUUAUGAAACUGCUAGGGCAGAAGGACAUCUACGUCCGCUCUGCCACUAAAA---AAAAUGCAAAAAUAACAUUAACGCUGUAGAGACAAGAAGAAAUUAACGCUUA ......................(((((((((((((.((((......))))..)))))).)))...---..((((.........))))......))))....................... ( -22.30) >DroSim_CAF1 9504 119 - 1 AAAUGGUAAACGAAUUAUGAAACUGCUAGGGCAGAAGGACAUCUACGUCCGCUCUGCCACUAAAAA-AAAAAUGCAAAAAUAACAUUAACGCUGUAGAGACAAGAAGAAAUUAACGCUUA ......................(((((((((((((.((((......))))..)))))).)))....-...((((.........))))......))))....................... ( -22.30) >DroYak_CAF1 9969 120 - 1 AAAUGGUAAACGAAUUAUGAUACUGCUAGGGCAGAAGGACAUCUACGUCUGCUCUGCCACUAAAAAGAAAAAUGCAAAAAUAACAUUUACGCUGUAGAGACAAGAAGAAAUUAACGCUUA ....................(((.(((((((((((.((((......))))..)))))).))).......(((((.........)))))..)).)))(((.....((....))....))). ( -22.40) >consensus AAAUGGUAAACGAAUUAUGAAACUGCUAGGGCAGAAGGACAUCUACGUCCGCUCUGCCACUAAAAA_AAAAAUGCAAAAAUAACAUUAACGCUGUAGAGACAAGAAGAAAUUAACGCUUA ......................(((((((((((((.((((......))))..)))))).)))...........((...............)).))))....................... (-21.46 = -21.21 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:53 2006