Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,479,478 – 1,479,585 |
Length | 107 |
Max. P | 0.515019 |
Location | 1,479,478 – 1,479,585 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.07 |
Mean single sequence MFE | -34.84 |
Consensus MFE | -10.26 |
Energy contribution | -11.06 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.28 |
Mean z-score | -1.71 |
Structure conservation index | 0.29 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1479478 107 + 23771897 GUCAUCU-AAUUGGGAAGAAUGCGGUAUUAAUACGGGGACUAUGAUCCUGGUUACAUCCAGGCAGAUGGUUAUGUCCAUGU-CGUGGCGUGUGUGUAUGUAUAUGCACA----------- (((((..-...((((.......(.(((....))).).((((((...(((((......)))))...))))))...))))...-.)))))((((((((....)))))))).----------- ( -29.20) >DroSec_CAF1 126348 104 + 1 GUCAUCC-AAUUAGGAAGAAUGCGGUAGGGAUACGGGGACUAUGAUCCUGGUUACAUCCAGGCAGAUGGU-AUGUCCGUGU-----------GUGUAUGUAUAUGCACAAGG-GGC-AC- .((.(((-.....))).)).(((.......(((((((.(((((...(((((......)))))...)))))-...)))))))-----------((((((....))))))....-.))-).- ( -31.50) >DroSim_CAF1 123796 115 + 1 GUCAUCC-AAUUAGGAAGAAUGCGGCAGGGAUACGGGGACUAUGAUCCUGGUUACAUCCAGGCAGAUGGU-AUGUCCGUGUGUGUGGCGUGUGUGUAUGUAUAUGCACAAGG-GGC-AC- (((.(((-.....)))...(((((.((.(.(((((((.(((((...(((((......)))))...)))))-...))))))).).)).)))))((((((....))))))....-)))-..- ( -40.70) >DroEre_CAF1 131195 113 + 1 GCCAGGUGAGAUGGGAAGCAUACGGAUGGAAUACGGAGAUUAGGAUCCCGUGUGCAUCCAGGCAGAGGGU-AAAUCCAUGU-CACAGCGUGUG----UGUAUAUGCACAAGA-GGCAACU (((..((((.(((((........(((((..((((((.(((....))))))))).)))))..((.....))-...))))).)-))).((((((.----...))))))......-))).... ( -40.00) >DroYak_CAF1 131903 102 + 1 GCCAGACGAGAUGGAAAGCAUA-----------CGGAGAUUGGGAUCCCAGGUGCAUCCAGGCAGUGGGC-AAUCCCAUGU-CACAGCGUGUG----UGUAUAUGCACAAGAAGGCAAC- (((..(((...((((..((((.-----------.((.(((....)))))..)))).))))((((.((((.-...)))))))-)....))).((----(((....)))))....)))...- ( -32.80) >consensus GUCAUCC_AAUUGGGAAGAAUGCGGUAGGAAUACGGGGACUAUGAUCCUGGUUACAUCCAGGCAGAUGGU_AUGUCCAUGU_CACAGCGUGUGUGUAUGUAUAUGCACAAGA_GGC_AC_ (((.....((((((((((..(.((.........)).)..))....)))))))).......)))....((......)).........(((((((......))))))).............. (-10.26 = -11.06 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:43 2006