| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,828,014 – 13,828,115 |
| Length | 101 |
| Max. P | 0.869005 |
| Location | 13,828,014 – 13,828,115 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 80.30 |
| Mean single sequence MFE | -34.05 |
| Consensus MFE | -20.26 |
| Energy contribution | -21.52 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.869005 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13828014 101 - 23771897 UUC-AUACCAC-----------UGAUAU----GGAAACUAGAAACGUGAAGGCAUCGCGUGAACUUCACGUGAUACCUGCCUCGCAGAACACUACGUCUUAUCGGGGGCGUGUGUGA- (((-...(((.-----------.....)----))...........((((.(((((((((((.....)))))))....)))))))).)))(((((((((((....)))))))).))).- ( -34.00) >DroSec_CAF1 2841 99 - 1 UUC-AUGCCAC-----------UGAUAU----GAAAACUAGAAACGUGAAGGCAUCGCGUGAACUUAACGUGAUACCUGCCUCGCAGAGCACUACGUCUUAUCGGGGGCG--UGUGA- ..(-(((((.(-----------(((((.----((...........((((.((((((((((.......))))))....))))))))...........)).)))))).))))--))...- ( -33.75) >DroSim_CAF1 1994 98 - 1 UUC-AUGCCAC-----------UGAUAU----GAAAACUAGAAACGUGAAGGCAUCGCGUGAACUUCACGUGAUACCUGCCUCGCAGAGCACUACGUCUUAUCGG-GGCG--UGUGA- ..(-(((((.(-----------(((((.----((...........((((.(((((((((((.....)))))))....))))))))...........)).))))))-))))--))...- ( -36.75) >DroEre_CAF1 2514 99 - 1 UUC-ACGCCGC-----------UGAUAC----AGAAACUAGAAACGUGAAGGCAUCGCGUGAACUUCACGUGAUACCUGCCUCGCCAAGCACUGCGUCUUAUCGGGAACG--UGUGC- ..(-((((..(-----------(((((.----(((...(((....((((.(((((((((((.....)))))))....))))))))......)))..)))))))))....)--)))).- ( -30.90) >DroYak_CAF1 2177 101 - 1 UUUAAUGCCAC-----------UGAUAC----AGAAACUAGAAACGUGAAGGCAUCGCGUGAACUUCACGUGAUACCUGCCUCGCCGAGCACUACGUCUUAUCGGAGGCG--UGUGAG ....(((((.(-----------(((((.----(((...(((....((((.(((((((((((.....)))))))....))))))))......)))..))))))))).))))--)..... ( -35.10) >DroAna_CAF1 2045 110 - 1 CUU-AUGGCACUAAAAAAAAAGUGAUAUCACAGAAAACUAGAAACGUGAAGGCAUCGCGUGUACUUCACGUGAUCCGUA--GUGCCAGUCUCUGUGCCUUAUCAU--CCG--GAGGA- ...-.((((((((........(((....)))...................((.((((((((.....)))))))))).))--)))))).((((((...........--.))--)))).- ( -33.80) >consensus UUC_AUGCCAC___________UGAUAU____GAAAACUAGAAACGUGAAGGCAUCGCGUGAACUUCACGUGAUACCUGCCUCGCAGAGCACUACGUCUUAUCGGGGGCG__UGUGA_ .............................................((((.(((((((((((.....)))))))....))))))))....(((..((((((....))))))...))).. (-20.26 = -21.52 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:48 2006