Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,825,460 – 13,825,564 |
Length | 104 |
Max. P | 0.500000 |
Location | 13,825,460 – 13,825,564 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 60.70 |
Mean single sequence MFE | -18.40 |
Consensus MFE | -9.62 |
Energy contribution | -8.29 |
Covariance contribution | -1.32 |
Combinations/Pair | 1.40 |
Mean z-score | -1.23 |
Structure conservation index | 0.52 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13825460 104 + 23771897 -------------CGUUUAUAAAAUUAGGC---GGAUCAACGUGAUCAGUAAAGUCUCACCCCUCUUGACAAGCAAAACAGUAUUUACCAAAAAUUAAAUGUUGUGUCGAGAAAUCGCAC -------------((((((......)))))---)((((.....))))................((((((((.....((((..((((.....))))....)))).))))))))........ ( -19.60) >DroSim_CAF1 7290 101 + 1 -------------UGUAUAUGAAAUUAAGU---UGAUCAACGUGAUCAGUAAAGUCUCACCCCUCUUGACAAGCAAAUCUUUAAUUACCACAAAUUAAAUG---UGUCGAGAAAUCGCAC -------------(((...(((.(((...(---(((((.....))))))...))).)))....(((((((..(((....(((((((......)))))))))---))))))))....))). ( -17.00) >DroYak_CAF1 7677 106 + 1 AAAGACACAUAUGUAUAUAUCAUAUCACAUAUAUGAUCGUGGCGAUCAAUAAAGUUUCACCUUUAUCGGCAAUUAAAUCUUU-----UCA-GAAUUUAAUG---AACUGAUAUAU----- ...((.((((((((((((...)))).)))))).((((((...)))))).....)).)).....((((((..(((((((((..-----..)-).))))))).---..))))))...----- ( -18.60) >consensus _____________UGUAUAUAAAAUUAAGU___UGAUCAACGUGAUCAGUAAAGUCUCACCCCUCUUGACAAGCAAAUCUUUA_UUACCA_AAAUUAAAUG___UGUCGAGAAAUCGCAC ..................................(((((...)))))................((((((((..((........................))...))))))))........ ( -9.62 = -8.29 + -1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:47 2006