| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,822,112 – 13,822,229 |
| Length | 117 |
| Max. P | 0.598259 |
| Location | 13,822,112 – 13,822,229 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 79.14 |
| Mean single sequence MFE | -37.82 |
| Consensus MFE | -23.43 |
| Energy contribution | -21.52 |
| Covariance contribution | -1.91 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.598259 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13822112 117 - 23771897 CAUUGUUGGCCAUCAUGCAAUUGCAGGCAGCUUCGAGGCAGUAAUUGUUAAGGAAUUGCUUGUAGUUAACUGCCUUGUGGCAACGAGCAAAGGUUGGAUGACUAUAAA-AAAGGAUAA ....(((..(((.(.(((((((((((((((.(((..(((((...)))))..))).))))))))))))...((((....))))....)))...).)))..)))......-......... ( -31.60) >DroVir_CAF1 4326 117 - 1 CAUUAUUGGCCUGCAGGCAAUCACAGGCCGCCUCCAGGCAGUAGUUGUUCGAAAAUUGUUUAUAGUUGACCGCCUUGUGGCACUUGGCGAAGGUGGGAUGGCUGCAGA-GCAGGAACA .........(((((.(((........)))(((....))).(((((..((....(((((....)))))..(((((((.((.(....).)))))))))))..)))))...-))))).... ( -39.10) >DroGri_CAF1 4847 117 - 1 CAUUGUUGGCCAGCAGGCAAUCGCAGGCUGCUUCCAGGCAGUAAUUGUUCGAGAACUGCUUAUAGUUGACUGCCUUGUGGCACUUGGCGAAUGUCGGAUGACUGCGGA-GAAGCAACA ...((((((((....)))..((((((((((((....))))))..(..(((((.(..((((...(((.....(((....)))))).))))..).)))))..))))))).-....))))) ( -40.60) >DroEre_CAF1 4304 118 - 1 CGUUGUUGGCCAUCAUGCAAUUACAGGCAGCUUCGAGGCAGUAAUUGUUGAGGAACUGCUUGUAGUUGACCGCCUUGUGGCAACGAGCAAAGGUUGGAUGACUAUAGGUAAAAGUUAA ......(((.((((...(((((((((((((.(((..(((((...)))))..))).))))))))))))).(.(((((.((....))....))))).))))).))).............. ( -36.80) >DroMoj_CAF1 4274 117 - 1 CAUUAUUUGCCAGCAAGCAAUCGCAGGCAGCCUCCAGGCAGUAGUUGUUGGAGAACUGCUUAUAGUUGACAGCCUUGUGGCACUUGGCGAAGGUGGGAUGGCUGCAGA-UCAAGAUGA ((((((((((.(((..((..((((((((((.((((((.(((...)))))))))..))))))..........(((....))).....))))..))......))))))))-)...)))). ( -36.90) >DroAna_CAF1 4290 118 - 1 CGUUAUUAGCUAUCAUGCAGUCGCAUGCAGCCUCAAGGCAGUAAUUGUUGAGGAACUGCUUAUAGUUGACAGCCUUGUGGCACCGGGCGAAGGUUGGAUGGCUGUACAUAAAAAGUGA .((...((((((((..((..((((.((..(((.((((((..(((((((.(((......))))))))))...)))))).)))..)).))))..))..)))))))).))........... ( -41.90) >consensus CAUUAUUGGCCAGCAUGCAAUCGCAGGCAGCCUCCAGGCAGUAAUUGUUGAAGAACUGCUUAUAGUUGACAGCCUUGUGGCACCGGGCGAAGGUUGGAUGACUGCAGA_AAAAGAUAA ((((..(((((....(((........)))(((...(((((((..((....))..)))))))..........(((....)))....)))...))))))))).................. (-23.43 = -21.52 + -1.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:46 2006