Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,808,735 – 13,808,847 |
Length | 112 |
Max. P | 0.521766 |
Location | 13,808,735 – 13,808,847 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 91.96 |
Mean single sequence MFE | -26.20 |
Consensus MFE | -21.96 |
Energy contribution | -22.52 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.42 |
Structure conservation index | 0.84 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521766 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13808735 112 - 23771897 UCAGAGAAGCGAAAGUAAGAGACCACAGAGAAUUCGCUCGUAACUCUCUACAAACCCCAUGAUGGG----UAACUCUCAUUGAAACUUUUCAAGCGUCGCGCUUAGCUUAGCAAAA ...((((.((....)).(((((.....(((......))).....)))))....((((......)))----)...)))).(((((....)))))((...((.....))...)).... ( -25.30) >DroSec_CAF1 2027 112 - 1 UCAGAGAAGCGAAAGUAAGAGACCACAGAGAAUUCGCUCGUAACUCUCUACAAACCCCAUGAUGGG----UAACUCUCAUUGAAACUUUUCAAGCGUCGCGCUUAGCUUAGCAAAA ...((((.((....)).(((((.....(((......))).....)))))....((((......)))----)...)))).(((((....)))))((...((.....))...)).... ( -25.30) >DroEre_CAF1 6580 111 - 1 UCAGAGAAGCGAAAGUAAGAGACUACAGAGAACUCGCUCGUAACUCUCUACAAACCCCAUGAUAGGUAUGUAACUCUCAUUGAAACUUUUCAAGCGUUUCGCU-----UAGCAAAG ...(..((((((((((..((((.(((.(((......))))))......((((.(((........))).))))..)))).(((((....))))))).)))))))-----)..).... ( -25.90) >DroYak_CAF1 6467 112 - 1 GCAGAGAAGCGAAAGUAAGAGACCACAGAGAAUUCGCUCGUAACUCUCUAUAAACCCCUUGAUGGG----UAACUCUCAUUGAAACUUUUCAAGCGUCUCGCUUAGCUUAGCAAAA ...((((.((((.(((.(((((.....(((......))).....)))))....((((......)))----).))).)).(((((....))))))).))))(((......))).... ( -28.30) >consensus UCAGAGAAGCGAAAGUAAGAGACCACAGAGAAUUCGCUCGUAACUCUCUACAAACCCCAUGAUGGG____UAACUCUCAUUGAAACUUUUCAAGCGUCGCGCUUAGCUUAGCAAAA ...((((.((((.(((.(((((.....(((......))).....)))))......(((.....)))......))).)).(((((....))))))).))))(((......))).... (-21.96 = -22.52 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:44 2006