Locus 5044

Sequence ID 3L_DroMel_CAF1
Location 13,808,569 – 13,808,662
Length 93
Max. P 0.810823
window8002

overview

Window 2

Location 13,808,569 – 13,808,662
Length 93
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 92.73
Mean single sequence MFE -29.63
Consensus MFE -23.69
Energy contribution -23.75
Covariance contribution 0.06
Combinations/Pair 1.08
Mean z-score -2.11
Structure conservation index 0.80
SVM decision value 0.65
SVM RNA-class probability 0.810823
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13808569 93 + 23771897
UGUUUGUUGCUUGUCGGCUUUUGUUGGAAAACGGUUCCAAAUGGUUGCA--CACGGAGAUGGUGGCAGUGAUCAAAUAAGAGCAACGAGCAUUGC
((((((((((((...((...(((((....)))))..))...((((..(.--(((.......)))...)..)))).....)))))))))))).... ( -29.10)
>DroSec_CAF1 1859 95 + 1
UGUUUGUUGCUUGUCGGCUUUUGUUGGAAAACGGUUCCAAAUGGUUGCACACACGGAGAUGGUGGCAGUGAUCAAAUAAGAGCAACGAGCAUUGC
((((((((((((...((...(((((....)))))..))...((((..(...(((.......)))...)..)))).....)))))))))))).... ( -29.80)
>DroEre_CAF1 6415 93 + 1
UGUUUGUUGCUGGUCGGCUUUUGUUGGAAAACGGUUCCAAGUGGUUGCA--CAUGGAGCUGGUGGCAGUGAUCAAAUAAGAGCAACGAGCAUUGU
(((((((((((..(((((....)))))....((((((((.(((....))--).))))))))...................))))))))))).... ( -32.70)
>DroYak_CAF1 6301 93 + 1
AGUUUGUUGCUGGUCGGCUUUGUUGUGGAAACGGUUCCAAAUGGUUGCA--CAUGGAGAUGGUGGCAGUGAUCAAAUAAGAGCAACGAGCAUUGC
.((((((((((((((((..(((((.....)))))..)).....((..(.--(((....))))..))...)))).......))))))))))..... ( -26.91)
>consensus
UGUUUGUUGCUGGUCGGCUUUUGUUGGAAAACGGUUCCAAAUGGUUGCA__CACGGAGAUGGUGGCAGUGAUCAAAUAAGAGCAACGAGCAUUGC
.((((((((((............((((((.....)))))).((((..(...(((.......)))...)..))))......))))))))))..... (-23.69 = -23.75 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:43 2006