| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,806,739 – 13,806,845 |
| Length | 106 |
| Max. P | 0.530292 |
| Location | 13,806,739 – 13,806,845 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 69.16 |
| Mean single sequence MFE | -22.45 |
| Consensus MFE | -14.35 |
| Energy contribution | -15.38 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.06 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.530292 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13806739 106 - 23771897 U-UCAAUUGCUUCUUUGUGCUUUGAGUAUCGGUGUCCUU-UUUAAAUUUCUUUUGCAGACAGUCAGUCCCGGCAUAGUUGAUACGGUCAUCUUGCCGGAGCAGAUACA .-((((..((........)).))))(((((((((((...-..((((.....))))..)))).)).(..((((((.((.((((...)))).))))))))..).))))). ( -27.90) >DroSec_CAF1 92 102 - 1 -----AUUGCUUCUGCGUCCUUUAAGUAUCGGUGUCUUA-UUUAAAUUUCUUUUGCAGACUGUCAGUCCCGGCAUUGUUGAUACGGACAUCUUGCCGGAGCAGAUCCA -----.(((((((((((...((((((((.........))-)))))).......)))))).........((((((.((((......))))...)))))))))))..... ( -26.30) >DroSim_CAF1 4493 106 - 1 U-UUAAUUGCUUCUGCGUUCUUUGAAUAUCGGUGUGUUA-UUUAAAUUUUCUUUGCAGACCGUCAGUCCCGGCAUUGUUGAUACGGACAUCUUGCCGGAGCAGAUCCA .-.....((..(((((.......((....((((.(((..-..............))).))))....))((((((.((((......))))...)))))).)))))..)) ( -30.69) >DroEre_CAF1 4264 92 - 1 U-GCCU------------UUUUUUAAUUUCAAUGAAUCCUUUAA---UCCUUUUGCAGACCGUCAGCCCCGGCAUUGUUGAUACGGACAUCUUGCCGGAGCAGAUACA .-....------------..........................---..............(((.((.((((((.((((......))))...)))))).)).)))... ( -18.60) >DroYak_CAF1 4417 87 - 1 U-UCAA--------------CUUUAAU------GAAUCCUUUUAUAUUACUUUUGCAGACCGUCAGUCCGGGCAUUGUUGAUACGGACAUCUUGCCGGAGCAGAUCCA .-....--------------.....((------(((....)))))......(((((...(((.(((((((..((....))...)))))....)).))).))))).... ( -16.40) >DroMoj_CAF1 187433 100 - 1 UCUAUGUUACUACUUAGUAC-------CUUACUUACUUA-CUUGAUAUUUAAUUUCAGACCAUAAGUCCCGGCAUUGUCGACACGGACAUCUUGCCCGAGCAGAUACA (((....((((....)))).-------............-((((.............(((.....)))..((((.((((......))))...)))))))).))).... ( -14.80) >consensus U_UCAAUUGCUUCU__GUUCUUUGAAUAUCGGUGACUUA_UUUAAAUUUCUUUUGCAGACCGUCAGUCCCGGCAUUGUUGAUACGGACAUCUUGCCGGAGCAGAUACA ...................................................(((((.(((.....)))((((((.((((......))))...)))))).))))).... (-14.35 = -15.38 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:42 2006