| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,796,574 – 13,796,681 |
| Length | 107 |
| Max. P | 0.678931 |
| Location | 13,796,574 – 13,796,681 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.14 |
| Mean single sequence MFE | -30.32 |
| Consensus MFE | -19.08 |
| Energy contribution | -21.08 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.678931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13796574 107 - 23771897 CAUCACGGCCAACAGCUUGCUCCA-AAAGCAUUGCAAUGGAAUUUUGUGCAUCUGAAGGAGAUAAAAGCGUGGCAUAU--------GUACGUA----UGUACAUACUUACUUACAGUGAA ..((((.((((...((((.((((.-..((...((((...........)))).))...))))....)))).)))).(((--------((((...----.)))))))..........)))). ( -31.40) >DroSec_CAF1 33475 103 - 1 CAUCACGGCCAACAGCUUGCUCCA-AAAGCAUUGCAAUGGAAUUUUGUGCAUCUGAGGGAGAUAAAAGCGUGGCAUAU--------GUACG--------UACAUACUUACUUACAGUGAA ..((((.((((...((((.((((.-..((...((((...........)))).))...))))....)))).))))...(--------(((.(--------((......))).)))))))). ( -29.90) >DroSim_CAF1 29582 103 - 1 CAUCACGGCCAACAGCUUGCACCA-AAAGCAUUGCAAUGGAAUUUUGUGCAUCUGAAGGAGAUAAAAGCGUGGCAUAU--------GUACG--------UACAUACUUACUUACAGUGAA ..((((.((((...((((((((.(-(((.(((....)))...))))))))((((.....))))..)))).))))...(--------(((.(--------((......))).)))))))). ( -26.80) >DroEre_CAF1 34556 120 - 1 CAUCACUGCCAACAGCUUGCUCCAAAAAGCAUUGCAAUGGAAUUUUGUGCAUGCGAAGGAGAUAAAAGCGUGGCAUAUGUAUGUAUGUACGUACGAAUGUACACACCUACUUACCAUGAA ..(((.(((((...((((.((((.....(((((((((.......))))).))))...))))....)))).)))))...(((.((.(((((((....))))))).)).)))......))). ( -35.00) >DroYak_CAF1 32161 112 - 1 CAUCAAUGCCAACAGCUUGCUCCAGAAAGCAUUGCAAUGGAAUUUUGAGCAUGCGAAGGAGAUAAAAGCGUGGCAUAU--------GUUCGUACUACUGUACUCACCUACUUACAACGAA ..((.((((((...((((.((((.....((((.((.............))))))...))))....)))).))))))..--------....((((....))))...............)). ( -28.52) >consensus CAUCACGGCCAACAGCUUGCUCCA_AAAGCAUUGCAAUGGAAUUUUGUGCAUCUGAAGGAGAUAAAAGCGUGGCAUAU________GUACGUA____UGUACAUACUUACUUACAGUGAA ..((((.((((...((((.((((.....((((..............)))).......))))....)))).))))............(((((......))))).............)))). (-19.08 = -21.08 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:17 2006