Locus 5034

Sequence ID 3L_DroMel_CAF1
Location 13,795,111 – 13,795,214
Length 103
Max. P 0.712813
window7968

overview

Window 8

Location 13,795,111 – 13,795,214
Length 103
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 72.22
Mean single sequence MFE -22.80
Consensus MFE -17.17
Energy contribution -18.30
Covariance contribution 1.13
Combinations/Pair 1.10
Mean z-score -1.22
Structure conservation index 0.75
SVM decision value 0.38
SVM RNA-class probability 0.712813
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13795111 103 - 23771897
-------UAAUUGUUGUUACCAUCGAAUCAUCAUAAAAUGUCUCCUUUUUUA----------CAGGAGUCCGCUCCUGUCUAGUGGUUCUUCUUAUUUUGGUAGCAGAACUGCACAACUG
-------.....((((((((((..(((((((..(((((.........)))))----------((((((....))))))....))))))).........)))))(((....)))))))).. ( -24.40)
>DroSec_CAF1 32166 101 - 1
UGUAUUGAAAUUGUUGUUACCAUC---------CAAAAUGUCUUCUUAUUCA----------UAGGAGUCCGCUCCUGUCUGGUGGUUCUUCUUAUUUUGGUAGCAGAACUGCACAACUG
..(((..((((.......((((.(---------((.((((......)))).(----------((((((....))))))).))))))).......))))..)))(((....)))....... ( -23.74)
>DroSim_CAF1 28286 110 - 1
UGUUUUGUAAUUGUUGUUACCAACGAAUCAUCUUAAAAUGGCUUCUUUUUCA----------UAGGAGUCCGCUCCUGUCUGGCGGUUCUUCUUAUUUUGGUAGCAGAACUGCACAACUG
.(((.((((....((((((((((.(((((((......)))).))).......----------.(((((.(((((.......)))))..)))))....))))))))))...)))).))).. ( -29.20)
>DroYak_CAF1 30629 108 - 1
UGUUUUGAAAUUGUUCCU------------UAAAUCUUUUUCCUGUUCUGAAUCCUUCCUGUGCUGAAUCCACUCCUGUCUAGCGGUUCUUCUUAUUUUGGUAGCAGAACUGCACAACUG
..................------------..............((((((...((.......(..(((.((.((.......)).)))))..).......))...)))))).......... ( -13.84)
>consensus
UGUUUUGAAAUUGUUGUUACCAUC______UCAUAAAAUGUCUUCUUUUUCA__________UAGGAGUCCGCUCCUGUCUAGCGGUUCUUCUUAUUUUGGUAGCAGAACUGCACAACUG
............(((((.............................................((((((....))))))....((((((((.((.........)).))))))))))))).. (-17.17 = -18.30 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:11 2006