Locus 5033

Sequence ID 3L_DroMel_CAF1
Location 13,793,372 – 13,793,482
Length 110
Max. P 0.507750
window7967

overview

Window 7

Location 13,793,372 – 13,793,482
Length 110
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 98.38
Mean single sequence MFE -30.46
Consensus MFE -29.52
Energy contribution -29.52
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.14
Structure conservation index 0.97
SVM decision value -0.05
SVM RNA-class probability 0.507750
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13793372 110 - 23771897
ACGAAGGCG--AAUCCUUGUGCUAUUUGCACAAGCGCACGAAACUUUAGUUAAACAUAGAUGCAAAAGGCAAAGGCCCCCUGGCUUUCCAUCUGCGGCUGCCACGCCCCCAU
.....((((--....(((((((.....)))))))((((.((...................(((.....)))((((((....))))))...)))))).......))))..... ( -30.40)
>DroSec_CAF1 30391 110 - 1
AAGAAGGCG--AAUCCUUGUGCUAUUUGCACAAGCGCACGAAACUUUAGUUAAACAUAGAUGCAAAAGGCAAAGGCCCCCUGGCUUUCCAUCUGCGGCUGCCACGCCCCCAU
.....((((--....(((((((.....)))))))((((.((...................(((.....)))((((((....))))))...)))))).......))))..... ( -30.40)
>DroSim_CAF1 26556 110 - 1
ACGAAGGCG--AAUCCUUGUGCUAUUUGCACAAGCGCACGAAACUUUAGUUAAACAUAGAUGCAAAAGGCAAAGGCCCCCUGGCUUUCCAUCUGCGGCUGCCACGCCCCCAU
.....((((--....(((((((.....)))))))((((.((...................(((.....)))((((((....))))))...)))))).......))))..... ( -30.40)
>DroEre_CAF1 29844 110 - 1
ACGCAGGCG--AAUCCUUGUGCUAUUUGCACAAGCGCACGAAACUUUAGUUAAACAUAGAUGCAAAAGGCAAAGGCCCCCUGGCUUUCCAUCUGCGGCUGCCACGCCCCCAU
..(((((((--....(((((((.....))))))))))..............................((..((((((....))))))))..))))(((......)))..... ( -30.70)
>DroYak_CAF1 28864 112 - 1
ACGCAGGCGAGAAUCCUUGUGCUAUUUGCACAAGCGCACGAAACUUUAGUUAAACAUAGAUGCAAAAGGCAAAGGCCCCCUGGCUUUCCAUCUGCGGCUGCCACGCCCCCAU
.....((((......(((((((.....)))))))((((.((...................(((.....)))((((((....))))))...)))))).......))))..... ( -30.40)
>consensus
ACGAAGGCG__AAUCCUUGUGCUAUUUGCACAAGCGCACGAAACUUUAGUUAAACAUAGAUGCAAAAGGCAAAGGCCCCCUGGCUUUCCAUCUGCGGCUGCCACGCCCCCAU
.....((((......(((((((.....)))))))((((.((...................(((.....)))((((((....))))))...)))))).......))))..... (-29.52 = -29.52 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:10 2006