| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,793,034 – 13,793,124 |
| Length | 90 |
| Max. P | 0.797356 |
| Location | 13,793,034 – 13,793,124 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 89.08 |
| Mean single sequence MFE | -28.90 |
| Consensus MFE | -24.10 |
| Energy contribution | -24.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.797356 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13793034 90 - 23771897 UGCGUCUGGUCGUGUGCCAGUGAAGGGAAUGCCCGAAAAAUCGGUCGCACUAGACGUACCAUUUAGUUGGACACCCA---------UCACACAUCACCA ((((((((((.(((.(((.((...(((....))).....)).))))))))))))))))(((......))).......---------............. ( -27.10) >DroSec_CAF1 30047 98 - 1 UGCGUCUGGUCGUGCGCCACUGAAGGGAAUGCCCGAAAAAUCGGUAGCACUAGACGUACCAUUUAGUUGGACACCCAACAUCA-CACCACACAUCACCG ((((((((((.((..(((......(((....)))((....))))).)))))))))))).......(((((....)))))....-............... ( -29.40) >DroSim_CAF1 26212 98 - 1 UGCGUCUGGUCGUGUGCCACUGAAGGGAAUGCCCGAAAAAUCGGUAGCACUAGACGUACCAUUUAGUUGGACACCCAACAUCA-UACCACACAUCACCA ((((((((((.((.((((......(((....)))((....)))))))))))))))))).......(((((....)))))....-............... ( -29.30) >DroEre_CAF1 29500 93 - 1 UGCGUCUGGUCGUGCGCCACUGAAGGGAAUGCCCGAAAAAUCGGUAGCACUAGACGUACCAUUUAGUUGGACACCCAC-----CCACCA-GCAUGGCCA ((((((((((.((..(((......(((....)))((....))))).))))))))))))((((...(((((........-----...)))-))))))... ( -29.80) >consensus UGCGUCUGGUCGUGCGCCACUGAAGGGAAUGCCCGAAAAAUCGGUAGCACUAGACGUACCAUUUAGUUGGACACCCAA______CACCACACAUCACCA ((((((((((.((..(((......(((....)))((....))))).))))))))))))(((......)))............................. (-24.10 = -24.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:09 2006