Locus 5031

Sequence ID 3L_DroMel_CAF1
Location 13,792,070 – 13,792,170
Length 100
Max. P 0.505924
window7965

overview

Window 5

Location 13,792,070 – 13,792,170
Length 100
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.57
Mean single sequence MFE -27.12
Consensus MFE -18.23
Energy contribution -18.34
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.25
Structure conservation index 0.67
SVM decision value -0.05
SVM RNA-class probability 0.505924
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13792070 100 + 23771897
------------GUAACAGGUCGCCAAUAGUCAGGCAGUUUGAAAUAUUUUGUAUUUUAUGCCAGCAAAAUUCCGUUGGCCAAGUGCCAAGUUUGCCACCAAUGCUGCAACA--------
------------(((.(((((.((.(((.....((((.((((((((((...)))))))).((((((........)))))).)).))))..))).)).)))..)).)))....-------- ( -23.50)
>DroVir_CAF1 45417 106 + 1
-----A-CGGCGGCAACAG-----CAUCA-GCAGGCAGUU-GGAAUAUUUUGUACUUUAUGCCAGCAA-AUUCCGUUGGCCAAGUGCCAAGUUUAACGCCAAUGCAGCCGCACAGCAUCG
-----.-..(((((....(-----(....-))..(((.((-((...((((.((((((...((((((..-.....)))))).)))))).))))......))))))).)))))......... ( -35.30)
>DroGri_CAF1 67549 112 + 1
CAUGAAAAGACAGCAACAA-----CAACA-GCAGGCAGUU-GGAAUAUUUUGUACUUUAUGCCAGCAA-AUUCCGUUGGCCAAGUGCCAAGUUUUACGCCGAUGCAGCCACACAGCAUCG
......(((((.((.....-----.....-)).((((.((-(..(((..........)))((((((..-.....))))))))).))))..)))))....((((((.........)))))) ( -26.80)
>DroSec_CAF1 29099 100 + 1
------------GUAACAGGUCGCCAAUAGUCAGGCAGUUUGAAAUAUUUUGUAUUUUAUGCCAGCAAAAUUCCGUUGGCAAAGUGCCAAGUUUGCCACCAAUGCUGCAACA--------
------------(((.(((((.((.(((.....((((.((((((((((...))))))))(((((((........))))))))).))))..))).)).)))..)).)))....-------- ( -25.40)
>DroEre_CAF1 28564 100 + 1
------------GUAACAGGUCGCCAAUAGUCAGGCAGUUUGAAAUAUUUUGUAUUUUAUGCCAGCAAAAUUCCGUUGGCCAAGUGCCAAGUUUGCCACCAAUGCUGCAACA--------
------------(((.(((((.((.(((.....((((.((((((((((...)))))))).((((((........)))))).)).))))..))).)).)))..)).)))....-------- ( -23.50)
>DroYak_CAF1 27574 103 + 1
---------GUGGUAACAGGUCGCCAAUAGUCAGGCAGUUUGAAAUAUUUUGUAUUUUAUGCCAGCAAAAUUCCGUUGGCCAAGUGCCAAGUUUGCCACCAAUGCUGCAACA--------
---------(((((((((((..(((........)))..))))....((((.((((((...((((((........)))))).)))))).))))))))))).............-------- ( -28.20)
>consensus
____________GUAACAGGUCGCCAAUAGUCAGGCAGUUUGAAAUAUUUUGUAUUUUAUGCCAGCAAAAUUCCGUUGGCCAAGUGCCAAGUUUGCCACCAAUGCUGCAACA________
..................................(((((.......((((.((((((...((((((........)))))).)))))).))))...........)))))............ (-18.23 = -18.34 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:08 2006