| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,791,219 – 13,791,324 |
| Length | 105 |
| Max. P | 0.537683 |
| Location | 13,791,219 – 13,791,324 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 78.66 |
| Mean single sequence MFE | -27.82 |
| Consensus MFE | -19.56 |
| Energy contribution | -21.95 |
| Covariance contribution | 2.39 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537683 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13791219 105 - 23771897 AAGAAAAAUGAAAUUUUCCCUGCGCCGAGCAUAUUUUGUGGUUGCUUAGGGGGAGUGGUUUUUUGGUCCUUGGUCCUUGGGAACGGGAUGUGGAUG-UGG-----------GAUGUG ..(((((((...(((..(((((.((.((.(((.....))).)))).)))))..))).))))))).((((...(((((.(....))))))..)))).-...-----------...... ( -30.10) >DroVir_CAF1 44307 87 - 1 ----------AAAUUUGCGCUGCGUUGAGCAUAUUUUGUGGUUGGUAA------AUGGGCUUAGGGAGCAUGAGAUUUGGCUACGACAUCUGGACAGUGGAG--------------A ----------...(((.(((((((((((((..((((..((.((..(((------......)))..)).))..))))...))).)))).....).))))).))--------------) ( -20.00) >DroSec_CAF1 28269 99 - 1 AAGAAAAAUGAAAUUUUCCCUGCGCCGAGCAUAUUUUGUGGUUGCUUAGGGGGAGUGGUUUUUUGGUUCUUGGUCCUUGGGAACGGGAUGUGGAUG-UGG----------------- ..(((((((...(((..(((((.((.((.(((.....))).)))).)))))..))).)))))))...(((..(((((.(....))))))..)))..-...----------------- ( -27.20) >DroSim_CAF1 24433 99 - 1 AAGAAAAAUGAAAUUUUCCCUGCGCCGAGCAUAUUUUGUGGUUGCUUAGGGGGAGUGGUUUUUUGGUCCUUGGUCCUUGGGAACGGGAUGUGGAUG-UGG----------------- ..(((((((...(((..(((((.((.((.(((.....))).)))).)))))..))).))))))).((((...(((((.(....))))))..)))).-...----------------- ( -30.10) >DroEre_CAF1 27692 104 - 1 AAGAAAAAUGAAAUUUUCCCUGCGCCGAGCAUAUUUUGUGGUUGCUUAGGGGGAGUGGUUUUUUGGUCCUUGGUCCUUGGGAACGGGAUGUGGAUG-UGGAUGU------------G ..(((((((...(((..(((((.((.((.(((.....))).)))).)))))..))).))))))).((((...(((((.(....))))))..)))).-.......------------. ( -30.10) >DroYak_CAF1 26658 116 - 1 AAGAAAAAUGAAAUUUUCCCUGCGCCGAGCAUAUUUUGUGGUUGCUUAGGGGGAGUGCUUUUUUGGUCCUAGGUCCUUGGGAACGGGAUGUGGAUG-UGGAUGUGGAUGUGGAUGCG ..((((((....(((..(((((.((.((.(((.....))).)))).)))))..)))..)))))).((((.(.(((((.(....)))))).))))).-.................... ( -29.40) >consensus AAGAAAAAUGAAAUUUUCCCUGCGCCGAGCAUAUUUUGUGGUUGCUUAGGGGGAGUGGUUUUUUGGUCCUUGGUCCUUGGGAACGGGAUGUGGAUG_UGG________________G ..(((((((...((((((((((.((.((.(((.....))).)))).)))))))))).))))))).((((...(((((.(....))))))..))))...................... (-19.56 = -21.95 + 2.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:04 2006