Locus 5028

Sequence ID 3L_DroMel_CAF1
Location 13,789,851 – 13,789,971
Length 120
Max. P 0.500000
window7960

overview

Window 0

Location 13,789,851 – 13,789,971
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 99.50
Mean single sequence MFE -29.44
Consensus MFE -29.20
Energy contribution -29.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.19
Structure conservation index 0.99
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13789851 120 + 23771897
AUUAUUUAUGGCUUGUGGACGCCUUUGCAUUAAAAUUGCCCAAGCAGGCUUAACCAAGUCCAUGACCACGUCCAGGCUGAAACGGGUCUAGCGACCAAAUUGCCGUACAAAAAUAUUACC
..(((((.(((.(..(((((((....(((.......)))....)).((.....))..)))))..)))).((...(((.......((((....)))).....)))..))..)))))..... ( -29.60)
>DroSec_CAF1 26857 120 + 1
AUUAUUUAUGGCUUGUGGACGCCUUUGCAUUAAAAUUGCCCAAGCAGGCUUAACCAAGUCCAUGACCACGUCCAGGCUGAAACGGGUCUAGCGACCAAAUUGCCGUACAAAAAUAUUACC
..(((((.(((.(..(((((((....(((.......)))....)).((.....))..)))))..)))).((...(((.......((((....)))).....)))..))..)))))..... ( -29.60)
>DroSim_CAF1 23001 120 + 1
AUUAUUUAUGGCUUGUGGACGCCUUUGCAUUAAAAUUGCCCAAGCAGGCUUAACCAAGUCCAUGACCACGUCCAGGCUGAAACGGGUCUAGCGACCAAAUUGCCGUACAAAAAUAUUACC
..(((((.(((.(..(((((((....(((.......)))....)).((.....))..)))))..)))).((...(((.......((((....)))).....)))..))..)))))..... ( -29.60)
>DroEre_CAF1 26314 120 + 1
AUUAUUUAUGGCUUGUGGACGCCUUUGCAUUAAAAUUGCCCAACCAGGCUUAACCAAGUCCAUGACCACGUCCAGGCUGAAACGGGUCUAGCGACCAAAUUGCCGUACAAAAAUAUUACC
..(((((.(((.(..(((((((....)).........(((......)))........)))))..)))).((...(((.......((((....)))).....)))..))..)))))..... ( -29.20)
>DroYak_CAF1 25220 120 + 1
AUUAUUUAUGGCUUGUGGACGCCUUUGCAUUAAAAUUGCCCAACCAGGCUUAACCAAGUCCAUGACCACGUCCAGGCUGAAACGGGUCUAGCGACCAAAUUGCCGUACAAAAAUAUUACC
..(((((.(((.(..(((((((....)).........(((......)))........)))))..)))).((...(((.......((((....)))).....)))..))..)))))..... ( -29.20)
>consensus
AUUAUUUAUGGCUUGUGGACGCCUUUGCAUUAAAAUUGCCCAAGCAGGCUUAACCAAGUCCAUGACCACGUCCAGGCUGAAACGGGUCUAGCGACCAAAUUGCCGUACAAAAAUAUUACC
..(((((.(((.(..(((((((....)).........(((......)))........)))))..)))).((...(((.......((((....)))).....)))..))..)))))..... (-29.20 = -29.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:03 2006