Locus 5027

Sequence ID 3L_DroMel_CAF1
Location 13,789,645 – 13,789,740
Length 95
Max. P 0.897787
window7959

overview

Window 9

Location 13,789,645 – 13,789,740
Length 95
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 98.32
Mean single sequence MFE -25.72
Consensus MFE -25.00
Energy contribution -24.84
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.42
Structure conservation index 0.97
SVM decision value 1.00
SVM RNA-class probability 0.897787
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13789645 95 + 23771897
AUAUUUAAGAUCCUGGGCUUCCUCUUGGGGCUGUCUCAUAGUUGAUCGUUUUGGGCCUAUUAGCCUUAAUGGGACCAUCAUGCUUGACUACCAA-A
..............((((..(((....)))..))))..((((..(.(((..(((.(((((((....))))))).)))..))).)..))))....-. ( -24.80)
>DroSec_CAF1 26651 95 + 1
AUAUUUAAGAUCCUGGGCUUCCUCUUGGGGCUGUCUCGUAGUUGAUCGUUUUGGGCCUAUUAGCCUUAAUGGGACCAUCAUGCUUGACUACCAA-A
..............((((..(((....)))..)))).(((((..(.(((..(((.(((((((....))))))).)))..))).)..)))))...-. ( -27.80)
>DroSim_CAF1 22795 95 + 1
AUAUUUAAGAUCCUGGGCAUCCUCUUGGGGCUGUCUCAUAGUUGAUCGUUUUGGGCCUAUUAGCCUUAAUGGGACCAUCAUGCUUGACUACCAA-A
..............(((((.(((....))).)))))..((((..(.(((..(((.(((((((....))))))).)))..))).)..))))....-. ( -26.10)
>DroEre_CAF1 26104 95 + 1
AUAUUUAAGAUCCUGGGCUUCCUCUUGGGGCUGUCUCAUAGUUGAUCGUUUUGGGCCUAUUAGCCUUAAUGGGACCAUCAUGCUUGACUACCAA-A
..............((((..(((....)))..))))..((((..(.(((..(((.(((((((....))))))).)))..))).)..))))....-. ( -24.80)
>DroYak_CAF1 25003 96 + 1
AUAUUUAAGAUCCUGGGCUUCCUCUUGGGGCUGUCUCAUAGUUGAUCGUUUUGGGCCUAUUAGCCUUAAUGGGACCAUCAUGCUUGGCUACCAAAA
..............((((..(((....)))..))))..((((..(.(((..(((.(((((((....))))))).)))..))).)..))))...... ( -25.10)
>consensus
AUAUUUAAGAUCCUGGGCUUCCUCUUGGGGCUGUCUCAUAGUUGAUCGUUUUGGGCCUAUUAGCCUUAAUGGGACCAUCAUGCUUGACUACCAA_A
.............(((((.(((....))))).......((((..(.(((..(((.(((((((....))))))).)))..))).)..)))))))... (-25.00 = -24.84 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:02 2006