Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,775,508 – 13,775,725 |
Length | 217 |
Max. P | 0.866534 |
Location | 13,775,508 – 13,775,619 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 94.43 |
Mean single sequence MFE | -29.26 |
Consensus MFE | -29.48 |
Energy contribution | -28.44 |
Covariance contribution | -1.04 |
Combinations/Pair | 1.15 |
Mean z-score | -1.05 |
Structure conservation index | 1.01 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.694948 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13775508 111 + 23771897 AAGGUUGGAAAUAAUCAAUAAUGAAAUGAAGGAGUUUGCCGAAACUUUGGCAAUAAGUGGUUUUGGGCUUGGCUUCCCUCG-GGCAGACUCCGUAGGUUUUGCUUAAUUUUG ..(((((....)))))......(((((...((((((((((((((((...((.....))))))))(((........)))...-)))))))))).((((.....))))))))). ( -28.10) >DroSec_CAF1 22129 108 + 1 AAGGUUGGAAA---UCAAUAAUGAAAUGAAGGAGUUUGCCGAAACUUUGGCAAUAAGUGGUUUUGGGCUUGGCUUCCCUCG-GGCAGACUCCGUAGGUUUUGCUUAAUUUUG ...((((....---.))))...(((((...((((((((((((((((...((.....))))))))(((........)))...-)))))))))).((((.....))))))))). ( -26.70) >DroSim_CAF1 17797 111 + 1 AAGGUUGGAAAUAAUCAAUAAUGAAAUGAAGGAGUUUGCCGAAACUUUGGCAAUAAGUGGUUUUGGGCUUGACUUCCCUCG-GGCAGACUCCGUAGGUUUUGCUUAAUUUUG ..(((((....)))))......(((((...((((((((((((((((...((.....))))))))(((........)))...-)))))))))).((((.....))))))))). ( -28.10) >DroEre_CAF1 21567 111 + 1 AAGGUUGAAAAUAAUCAAUAAUGGAAUGAAGGAGUUUGCCGAAACUUUGGCAAUAAGUGGUUUCGGGCUUGGUUUCCCUCG-GGCAGACUCUGAAGGUUUCGCUUAAUUUGG ((((((((......)))))...(((((...((((((((((((((((...((.....))))))))(((........)))...-))))))))))....))))).)))....... ( -30.50) >DroYak_CAF1 20302 112 + 1 AAGGUUGAAAAUAAUCAAUAAUGAAAUGAAGGAGUUUGCCGAAACUUUGGCAAUAAGUGGUUUCGGGCUUGGUUUCCCUCGGGGCAGACUCCGAAGGUUUCGCUUAAUUUUG ((((((((......)))))...(((((...((((((((((((((((...((.....))))))))(((........)))....))))))))))....))))).)))....... ( -32.90) >consensus AAGGUUGGAAAUAAUCAAUAAUGAAAUGAAGGAGUUUGCCGAAACUUUGGCAAUAAGUGGUUUUGGGCUUGGCUUCCCUCG_GGCAGACUCCGUAGGUUUUGCUUAAUUUUG ((((((((......)))))...(((((...((((((((((((((((...((.....))))))))(((........)))....))))))))))....))))).)))....... (-29.48 = -28.44 + -1.04)
Location | 13,775,508 – 13,775,619 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 94.43 |
Mean single sequence MFE | -21.20 |
Consensus MFE | -17.10 |
Energy contribution | -17.30 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.64 |
Structure conservation index | 0.81 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.739089 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13775508 111 - 23771897 CAAAAUUAAGCAAAACCUACGGAGUCUGCC-CGAGGGAAGCCAAGCCCAAAACCACUUAUUGCCAAAGUUUCGGCAAACUCCUUCAUUUCAUUAUUGAUUAUUUCCAACCUU ...((((((...........(((((.((((-.(((((........)))......((((.......)))).)))))).)))))............))))))............ ( -20.10) >DroSec_CAF1 22129 108 - 1 CAAAAUUAAGCAAAACCUACGGAGUCUGCC-CGAGGGAAGCCAAGCCCAAAACCACUUAUUGCCAAAGUUUCGGCAAACUCCUUCAUUUCAUUAUUGA---UUUCCAACCUU ..(((((((...........(((((.((((-.(((((........)))......((((.......)))).)))))).)))))............))))---)))........ ( -20.40) >DroSim_CAF1 17797 111 - 1 CAAAAUUAAGCAAAACCUACGGAGUCUGCC-CGAGGGAAGUCAAGCCCAAAACCACUUAUUGCCAAAGUUUCGGCAAACUCCUUCAUUUCAUUAUUGAUUAUUUCCAACCUU ...((((((...........(((((.((((-.(((((........)))......((((.......)))).)))))).)))))............))))))............ ( -20.10) >DroEre_CAF1 21567 111 - 1 CCAAAUUAAGCGAAACCUUCAGAGUCUGCC-CGAGGGAAACCAAGCCCGAAACCACUUAUUGCCAAAGUUUCGGCAAACUCCUUCAUUCCAUUAUUGAUUAUUUUCAACCUU .....................((((.((((-...((....))......(((((..............))))))))).)))).............((((......)))).... ( -20.24) >DroYak_CAF1 20302 112 - 1 CAAAAUUAAGCGAAACCUUCGGAGUCUGCCCCGAGGGAAACCAAGCCCGAAACCACUUAUUGCCAAAGUUUCGGCAAACUCCUUCAUUUCAUUAUUGAUUAUUUUCAACCUU ...........((((.....(((((.((((....((....))......(((((..............))))))))).)))))....))))....((((......)))).... ( -25.14) >consensus CAAAAUUAAGCAAAACCUACGGAGUCUGCC_CGAGGGAAGCCAAGCCCAAAACCACUUAUUGCCAAAGUUUCGGCAAACUCCUUCAUUUCAUUAUUGAUUAUUUCCAACCUU ....................(((((.((((....(((........)))......((((.......))))...)))).))))).............................. (-17.10 = -17.30 + 0.20)
Location | 13,775,619 – 13,775,725 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 97.64 |
Mean single sequence MFE | -25.77 |
Consensus MFE | -24.65 |
Energy contribution | -24.27 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.06 |
Mean z-score | -2.03 |
Structure conservation index | 0.96 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866534 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13775619 106 - 23771897 GACUAAUGUAAUAUUUAAGCGACAGAAAUAUUCACAAAAAGUUCAGCUUAAUCGCAAGCUGCAUCUGUUGCUAUACCAACUUUUGCCUGGUAUUUAAGUAAGGCAU .....((((..(((((((((((((((.......((.....)).((((((......))))))..)))))))))((((((.........)))))).))))))..)))) ( -26.60) >DroSim_CAF1 17908 106 - 1 GGAUAAUGUAAUAUUUAAGCGACAGAAAUAUUCACAAAAAGUUGAGCUUAAUCGCAGGCUGCAUCUGUUGCUAUACCAACUUUUGCCUGGUAUUUAAGUAAGGCAU .....((((..(((((((((((((((........(((....)))(((((......)))))...)))))))))((((((.........)))))).))))))..)))) ( -25.60) >DroEre_CAF1 21678 106 - 1 GGAUAAUGUAAUAUUUAAGCGACAGAAAUAUUCACAAAAAGUUGAGCUUAAUCGCAGGCUGCAUCUGUUGCUAUACCAACUUUUGCCUGGUAUUUAAGUGAGGCAU .....((((..(((((((((((((((........(((....)))(((((......)))))...)))))))))((((((.........)))))).))))))..)))) ( -25.30) >DroYak_CAF1 20414 106 - 1 GGAUAAUGUAAUAUUUAAGCGACAGAAAUAUUCACAAAAAGUUGAGCUUAAUCGCAGGCUGCAUCUGUUGCUAUACCAACUUUUGCCUGGUAUUUAAGUAAGGCAU .....((((..(((((((((((((((........(((....)))(((((......)))))...)))))))))((((((.........)))))).))))))..)))) ( -25.60) >consensus GGAUAAUGUAAUAUUUAAGCGACAGAAAUAUUCACAAAAAGUUGAGCUUAAUCGCAGGCUGCAUCUGUUGCUAUACCAACUUUUGCCUGGUAUUUAAGUAAGGCAU .....((((..(((((((((((((((.......((.....))..(((((......)))))...)))))))))((((((.........)))))).))))))..)))) (-24.65 = -24.27 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:54 2006