Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,773,077 – 13,773,173 |
Length | 96 |
Max. P | 0.842315 |
Location | 13,773,077 – 13,773,173 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -19.72 |
Consensus MFE | -15.69 |
Energy contribution | -15.33 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.16 |
Mean z-score | -1.87 |
Structure conservation index | 0.80 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842315 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13773077 96 - 23771897 CCCGAAAUGAACACUUCGCCAUUAAAUGGGUGAGGAGUAUCCUUUUUGUAUCACUUGGCUCUGGAUUUUCGCCGCUUUUCUCUCUUCAUUUUCUUC ...(((((((((.(((((((........))))))).))..................(((...........)))............))))))).... ( -18.10) >DroSec_CAF1 19772 96 - 1 CCCGAAAUGAACACUUCGCCAUUAAAUGGGUGAGGAGUAUCCUUUUUGUAUCACUUGCCUCUGGAUUUUCGCAGCUUUUCUCUCUUCAUUUUCUUC ...(((((((((.(((((((........))))))).))((((.....(((.....)))....))))...................))))))).... ( -18.30) >DroSim_CAF1 15113 96 - 1 CCCGAAAUGAACACUUCGCCAUUAAAUGGGUGAGGAGUAUCCUUUUUGUAUCACUUGCCUCUGGAUUUUCGCCGCUUUUCUCUCUUCAUUUUCUUC ...(((((((((.(((((((........))))))).))((((.....(((.....)))....))))...................))))))).... ( -18.30) >DroEre_CAF1 19147 96 - 1 CCCAAAGUGAACACCUCGCCUUUAAAUGGGUGAGGAGAAUCCUUUUUGUAUCACUUGGCUCCGGAUUUUCUCCGCUUUUCUCUCUUCAUUUUCUUC .((((.((((((.((((((((......))))))))((((....)))))).))))))))...((((.....))))...................... ( -24.90) >DroYak_CAF1 17782 96 - 1 UCCAAAAUGAACACUUCGCCUUUAAAUGGCUGAGGAGUAUCCUUUUUGUAUCACUUGGCUCUGGAUUUUCUCCGCUUUUCCCUCUUCAUUUUCUUC ...((((((((......(((.......)))...((((.((((.....((........))...))))...))))...........)))))))).... ( -19.00) >consensus CCCGAAAUGAACACUUCGCCAUUAAAUGGGUGAGGAGUAUCCUUUUUGUAUCACUUGGCUCUGGAUUUUCGCCGCUUUUCUCUCUUCAUUUUCUUC ...((((((((..(((((((........)))))))...((((....................))))..................)))))))).... (-15.69 = -15.33 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:46 2006