Locus 5020

Sequence ID 3L_DroMel_CAF1
Location 13,772,838 – 13,772,939
Length 101
Max. P 0.997707
window7941

overview

Window 1

Location 13,772,838 – 13,772,939
Length 101
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 99.02
Mean single sequence MFE -27.86
Consensus MFE -27.22
Energy contribution -27.06
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -2.16
Structure conservation index 0.98
SVM decision value 2.91
SVM RNA-class probability 0.997707
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13772838 101 + 23771897
GUCUGUCAAUAGCUAAAGUUGGCUGACGAAGCCAAAAACAAAACACUGGCUGCGAAGAAGCCAAGCGCAGCCUUU-UGGCAGCUGGAAAAACACAUAUAUGU
(.(((((((.........((((((.....))))))............(((((((...........)))))))..)-)))))))................... ( -28.40)
>DroSec_CAF1 19518 102 + 1
GUCUGUCAAUAGCUAAAGUUGGCUGACGAAGCCAAAAACAAAACACUGGCUGCGAAGAAGCCAAGCGCAGCCUUUCUGGCAGCUGGAAAAACACAUAUAUGU
(.((((((..........((((((.....))))))............(((((((...........)))))))....)))))))................... ( -27.60)
>DroSim_CAF1 14859 102 + 1
GUCUGUCAAUAGCUAAAGUUGGCUGACGAAGCCAAAAACAAAACACUGGCUGCGAAGAAGCCAAGCGCAGCCUUUCUGGCAGCUGGAAAAACACAUAUAUGU
(.((((((..........((((((.....))))))............(((((((...........)))))))....)))))))................... ( -27.60)
>DroEre_CAF1 18890 101 + 1
GUCUGUCAAUAGCUAAAGUUGGCUGACGAAGCCAAAAACAAAACACUGGCUGCGAAGAAGCCAAGCGCAGCCUUU-UGGCAGCUGGAAAAACACAUAUAUGU
(.(((((((.........((((((.....))))))............(((((((...........)))))))..)-)))))))................... ( -28.40)
>DroYak_CAF1 17515 101 + 1
GUCUGUCAAUAGCUAAAGUUGGUUGACGAAGCCAAAAACAAAACACUGGCUGCGAAGAAGCCAAGCGCAGCCUUU-UGGCAGCUGGAAAAACACAUAUAUGU
.((((((((((((....))).))))))...(((((((..........(((((((...........))))))))))-))))....)))............... ( -27.30)
>consensus
GUCUGUCAAUAGCUAAAGUUGGCUGACGAAGCCAAAAACAAAACACUGGCUGCGAAGAAGCCAAGCGCAGCCUUU_UGGCAGCUGGAAAAACACAUAUAUGU
(.((((((..........((((((.....))))))............(((((((...........)))))))....)))))))................... (-27.22 = -27.06 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:45 2006