Locus 502

Sequence ID 3L_DroMel_CAF1
Location 1,467,323 – 1,467,416
Length 93
Max. P 0.500000
window752

overview

Window 2

Location 1,467,323 – 1,467,416
Length 93
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 83.45
Mean single sequence MFE -23.62
Consensus MFE -16.74
Energy contribution -16.60
Covariance contribution -0.14
Combinations/Pair 1.05
Mean z-score -1.57
Structure conservation index 0.71
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1467323 93 - 23771897
-CGACGCGGUAUUAAAUCAAUGCCAAUCCAUAAAUGGCCUAC-GCCAUUAUGAGG--CGCGUAGAUUGAA---UUGGAAUCUCUUG----GCGAUUUCAUUAUU
-..((((((((((.....))))))....(((((.((((....-)))))))))...--.))))........---.(((((((.....----..)))))))..... ( -24.80)
>DroVir_CAF1 123278 89 - 1
UAGACGCGGUAUUAAAUCAAUGCCAAUCCAUAAAUGGUGCAU-------AC--GA--CGCGUCGAUUGUAUUAUUGGAAUCUCUUA----GCGAUUUCAUUAUU
....(((((((((.....))))))..((((...((((((((.-------.(--((--....)))..))))))))))))........----)))........... ( -22.70)
>DroGri_CAF1 103749 96 - 1
UGGACGCGGUAUUAAAUCAAUGCCAAUCCAUAAAUGGGUCUCCGCA---GC--GAUGCGCGUAGAUUGAA---UUGGAAUCUCUCAGUGAGCGAUUUCAUUAUU
((((...((((((.....))))))..))))....(.((((((((((---..--..)))).).))))).).---.(((((((.(((...))).)))))))..... ( -25.70)
>DroSec_CAF1 116023 93 - 1
-CGACGCGGUAUUAAAUCAAUGCCAAUCCAUAAAUGGCCUAC-GCCAUUAUGAGG--CGCGUAGAUAGAA---UUGGAAUCUCUUG----GCGAUUUCAUUAUU
-..((((((((((.....))))))....(((((.((((....-)))))))))...--.))))........---.(((((((.....----..)))))))..... ( -24.80)
>DroSim_CAF1 113137 93 - 1
-CGACGCGGUAUUAAAUCAAUGCCAAUCCAUAAAUGGCCUAC-GCCAUUAUGAGG--CGCGUAGAUUGAA---UUGGAAUCUCUUG----GCGAUUUCAUUAUU
-..((((((((((.....))))))....(((((.((((....-)))))))))...--.))))........---.(((((((.....----..)))))))..... ( -24.80)
>DroWil_CAF1 116058 84 - 1
--AAUGCGGUAUUAAAUCAAUGCCAAUCCAUAAAUGGCCUAC-GC--------GG--CGCGUAGAUUGAA---UUGGAAUCUCUUG----GCGAUUUCAUUAUU
--.((((((((((.....))))))............(((...-..--------))--)))))........---.(((((((.....----..)))))))..... ( -18.90)
>consensus
_CGACGCGGUAUUAAAUCAAUGCCAAUCCAUAAAUGGCCUAC_GCC___AU__GG__CGCGUAGAUUGAA___UUGGAAUCUCUUG____GCGAUUUCAUUAUU
...((((((((((.....))))))...(((....))).....................))))............(((((((.(.......).)))))))..... (-16.74 = -16.60 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:39 2006