Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,770,558 – 13,770,673 |
Length | 115 |
Max. P | 0.870244 |
Location | 13,770,558 – 13,770,673 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 94.90 |
Mean single sequence MFE | -31.78 |
Consensus MFE | -27.94 |
Energy contribution | -28.70 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.10 |
Mean z-score | -1.46 |
Structure conservation index | 0.88 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870244 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13770558 115 - 23771897 CAUGUGAGGAAACAUUUGGCGCGCAAGUAAAUGUGCAUGUGGGUGAGAUGGUUU-UUGCCGUUUCUAGACUGCUCUUUGUUUGAGUUGUGUUUUAAUUUCCAUAUUACGUGCUGGC ((((((((....).......(((((......))))).((((((.((((((((..-..)))))))).((((.((((.......))))...)))).....)))))))))))))..... ( -33.10) >DroSec_CAF1 17247 115 - 1 CAUGUGAGGAAACAUUUGGCGCGCAAGUAAAUGUGCAUGUGGGUGAGAUGGUUU-UUGCCGUUUCUAGAGUGCUCUUUGUUUGAGUUGUGUUUUAAUUUCCAUAUUACGUGCUGGC ((((((((....).......(((((......))))).((((((.((((((((..-..))))))))(((((..(.(((.....)))..)..)))))...)))))))))))))..... ( -33.20) >DroSim_CAF1 12580 115 - 1 CAUGUGAGGAAACAUUUGGCGCGCAAGUAAAUGUGCAUGUGGGUGAGAUGGUUU-UUGCCGUUUCUAGACUGCUCUUUGUUUGAGUUGUGUUUUAAUUUCCAUAUUACGUGCUGGC ((((((((....).......(((((......))))).((((((.((((((((..-..)))))))).((((.((((.......))))...)))).....)))))))))))))..... ( -33.10) >DroEre_CAF1 16676 116 - 1 CAUGUGAGGAAACAUUUGCUGCGCAAGUAAAUGUGCAGGUGGGUGAGACGAUUUUUUUGCGUUUCUAGACUGCUCUUUGUUUGAGUUGUGUUUUAAUUUCCAUAUUACGUGCUGGC ((((((((....).....(((((((......)))))))(((((.((((((.........)))))).((((.((((.......))))...)))).....))))).)))))))..... ( -31.70) >DroYak_CAF1 14565 115 - 1 CAUGUGAGGAAACAUUUACUACGCAAGUAAAUGUGCAGGUGGGUGAGAUGUUUUUUUGCCGUUUCUAGACUGCUCUUUGUUUGAGUUGUGUUUUAAUUUCCAUAUUACGUGCUG-C ((((((((((((((((((((.....)))))))))..(((..((..(((.....)))..))...)))((((.((((.......))))...))))....))))...)))))))...-. ( -27.80) >consensus CAUGUGAGGAAACAUUUGGCGCGCAAGUAAAUGUGCAUGUGGGUGAGAUGGUUU_UUGCCGUUUCUAGACUGCUCUUUGUUUGAGUUGUGUUUUAAUUUCCAUAUUACGUGCUGGC ((((((((((((...((((.((((((.((((((.((((......((((((((.....))))))))....))))....))))))..)))))).)))))))))...)))))))..... (-27.94 = -28.70 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:44 2006