Locus 5018

Sequence ID 3L_DroMel_CAF1
Location 13,770,025 – 13,770,136
Length 111
Max. P 0.597854
window7939

overview

Window 9

Location 13,770,025 – 13,770,136
Length 111
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 87.88
Mean single sequence MFE -26.67
Consensus MFE -18.46
Energy contribution -20.22
Covariance contribution 1.76
Combinations/Pair 1.10
Mean z-score -1.92
Structure conservation index 0.69
SVM decision value 0.13
SVM RNA-class probability 0.597854
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13770025 111 - 23771897
AAUGUAAUUGAAAUAUUGCUCAUACGCAGCAUGUGCCCAUUUAUUGAAACUGGAAAGAAUGCCAAGUUGGUUCAUACCCAGUUGGCC-CAAUCAGGCCAAUUCAAUGACAUA
.((((.((((((...((((......))))..((.(((.....((((...((....))...(((((.(.(((....))).).))))).-))))..))))).)))))).)))). ( -26.90)
>DroSec_CAF1 16565 111 - 1
AAUGUAAUUGAAAUAUUGCUCAUACGCAGCGUGUGCCCAUUUAUUGAAACUGGAAAGAAUGCCAAGUUGGUUCAUACCCAGUUGGCC-CGAUCAGGCCAAUUCAAUGACAUA
.((((.((((((....((..((((((...))))))..))........((((((.......(((.....)))......))))))((((-......))))..)))))).)))). ( -29.12)
>DroSim_CAF1 11841 111 - 1
AAUGUAAUUGAAAUAUUUCUCAUACGCAGCGUGUGCCCAUUUAUUGAAACUGGAAAGAAUGCCAAGUUGGUUCAUACCCAGUUGGCC-CAAUAAGGCCAAUUCAAUGACAUA
.((((.((((((........((((((...))))))............((((((.......(((.....)))......))))))((((-......))))..)))))).)))). ( -28.22)
>DroEre_CAF1 15990 106 - 1
AAUGUAAUUGAAAUAUUGCUCAUACGCAGCAUGUGCCAUUUC-UUG-----GGAAAUAAUGCCAAGUCGGUUCAUACCAAGUUGGCCCCAAUAAGGCCAAUUCAGAGACAUA
.((((..(((((...((((......))))..((.(((.((..-(((-----((.......(((((.(.(((....))).).)))))))))).))))))).)))))..)))). ( -28.21)
>DroYak_CAF1 13954 101 - 1
AAUGUAAUUGAAAUAUUGCUCAUACGCAGCAUGUGCCCUUUUAUUGAAACUGGAAAUAAUGCCAAGUUGGUUCAAACC-----------AAUAAGGCCAAUUCAGAGGCAUA
...............((((......))))..((((((.(((....))).(((((......(((..((((((....)))-----------)))..)))...))))).)))))) ( -20.90)
>consensus
AAUGUAAUUGAAAUAUUGCUCAUACGCAGCAUGUGCCCAUUUAUUGAAACUGGAAAGAAUGCCAAGUUGGUUCAUACCCAGUUGGCC_CAAUAAGGCCAAUUCAAUGACAUA
.((((.((((((....(((((....).))))((.(((............((....))...(((((.(.(((....))).).)))))........))))).)))))).)))). (-18.46 = -20.22 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:43 2006