Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,769,302 – 13,769,400 |
Length | 98 |
Max. P | 0.816166 |
Location | 13,769,302 – 13,769,400 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 99.18 |
Mean single sequence MFE | -16.68 |
Consensus MFE | -16.24 |
Energy contribution | -16.08 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.40 |
Structure conservation index | 0.97 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.816166 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13769302 98 + 23771897 CUUACCGCACUCUGGUCUGUGUACUUUUGUUCAAAUAUUCAUUGCAAAUUCCAAUUUAAUUUUCGCUUAAAUUGGCAAUACCAACAGCGAAAUCUGCA ......(((...(((....((((....(((....))).....))))....))).......(((((((....((((.....)))).)))))))..))). ( -16.20) >DroSec_CAF1 15846 98 + 1 CUUACCGCACUCUGGUCUGUGUACUUUUGUUCAAAUAUUCAUUGCAAAUUCCAAUUUAAUUUUCGCUUAAAUUGGCAAUACCAAUAGCGAAAUCUGCA ......(((...(((....((((....(((....))).....))))....))).......(((((((...(((((.....))))))))))))..))). ( -17.80) >DroSim_CAF1 11121 98 + 1 CUUACCGCACUCUGGUCUGUGUACUUUUGUUCAAAUAUUCAUUGCAAAUUCCAAUUUAAUUUUCGCUUAAAUUGGCAAUACCAACAGCGAAAUCUGCA ......(((...(((....((((....(((....))).....))))....))).......(((((((....((((.....)))).)))))))..))). ( -16.20) >DroEre_CAF1 15272 98 + 1 CUUACCGCACUCUGGUCUGUGUACUUUUGUUCAAAUAUUCAUUGCAAAUUCCAAUUUAAUUUUCGCUUAAAUUGGCAAUACCAACAGCGAAAUCUGCA ......(((...(((....((((....(((....))).....))))....))).......(((((((....((((.....)))).)))))))..))). ( -16.20) >DroYak_CAF1 13269 98 + 1 CUUACCGCACUCUGGUCUGUGUGCUUUUGUUCAAAUAUUCAUUGCAAAUUCCAAUUUAAUUUUCGCUUAAAUUGGCAAUACCAACAGCGAAAUCUGCA ......(((...(((...((.(((...((..........))..))).)).))).......(((((((....((((.....)))).)))))))..))). ( -17.00) >consensus CUUACCGCACUCUGGUCUGUGUACUUUUGUUCAAAUAUUCAUUGCAAAUUCCAAUUUAAUUUUCGCUUAAAUUGGCAAUACCAACAGCGAAAUCUGCA ......(((...(((....((((....(((....))).....))))....))).......(((((((....((((.....)))).)))))))..))). (-16.24 = -16.08 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:42 2006