Locus 5016

Sequence ID 3L_DroMel_CAF1
Location 13,768,532 – 13,768,647
Length 115
Max. P 0.744611
window7937

overview

Window 7

Location 13,768,532 – 13,768,647
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 93.91
Mean single sequence MFE -35.76
Consensus MFE -32.64
Energy contribution -32.32
Covariance contribution -0.32
Combinations/Pair 1.13
Mean z-score -1.22
Structure conservation index 0.91
SVM decision value 0.46
SVM RNA-class probability 0.744611
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13768532 115 + 23771897
GCCCAAUUUCACAUGUGACAGAAGGGCGGAAGCGGGAGAAGCGUGAAGGGCUACGUGGAUGUCACGCUCGACGGCAAAGUAUGGAAAAAUCAAAUCCAUUGCAAUUGCCGUUCGA
.(((....(((....))).......((....)))))....((((((....((....))...))))))((((((((((.(((((((.........)))).)))..)))))).)))) ( -36.90)
>DroSec_CAF1 15080 109 + 1
------UGUCACAUGUGACAGAGGGGCGGAAGCGGGGGAAGCGUGAAGGGCUACGUGGAUGUCACGCUCGACGGCAAAGUAUGGAAAAAUCAAAUCCAUUGCAACUGCCGUUCGA
------(((((....)))))(((.(((((..((.(..((.((((((....((....))...))))))))..).))...(((((((.........)))).)))..))))).))).. ( -39.10)
>DroSim_CAF1 10343 115 + 1
GCCCAAUUUCACAUGUGACAGAAGGGCGGAAGCGGGGGAAGCGUGAAGGGCUACGUGGAUGUCACGCUCGACGGCAAAGUAUGGAAAAAUCAAAUCCAUUGCAACUGCCGUUCGA
.(((....(((....))).......((....)))))....((((((....((....))...))))))(((((((((..(((((((.........)))).)))...))))).)))) ( -36.40)
>DroEre_CAF1 14452 114 + 1
GCCCAAUUUCACAUGUGACAGAGGGGCGGAAGCGGGAGAAGCGUGAAGGGCUACGUGGAUGUCACGCUCGACGGCA-AGUAUGGAAAAAUCAAAUGCGCUGCAACUGCCGUUCGA
((((..(.(((....))).)...)))).(((.(((.((.(((((((....((....))...))))))).....(((-.((((...........))))..)))..)).)))))).. ( -34.30)
>DroYak_CAF1 12476 115 + 1
GCCCAAUUUCACAUGUGACAGAAGGGCGGAAGCGGGAGAAGCUUGAAGGGCUACGUGGAUGUCACGCUCGAUGGCAAAGUAUGGAAAAAUCAAAUCCACUGCAACUGCCGUUCGA
........(((....)))..(((.(((((..((((.....(((....((((...(((.....)))))))...)))......((((.........))))))))..))))).))).. ( -32.10)
>consensus
GCCCAAUUUCACAUGUGACAGAAGGGCGGAAGCGGGAGAAGCGUGAAGGGCUACGUGGAUGUCACGCUCGACGGCAAAGUAUGGAAAAAUCAAAUCCAUUGCAACUGCCGUUCGA
........(((....)))..(((.(((((..((.(..((.((((((....((....))...))))))))..).))...(((((((.........)))).)))..))))).))).. (-32.64 = -32.32 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:41 2006