Locus 5012

Sequence ID 3L_DroMel_CAF1
Location 13,764,246 – 13,764,336
Length 90
Max. P 0.978682
window7930

overview

Window 0

Location 13,764,246 – 13,764,336
Length 90
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 91.30
Mean single sequence MFE -17.30
Consensus MFE -15.36
Energy contribution -15.92
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -2.35
Structure conservation index 0.89
SVM decision value 1.82
SVM RNA-class probability 0.978682
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13764246 90 - 23771897
G----GGUAUCCGGGAAGGCAAAAUGAAUUUAAUUUAAAUUCAUAUAACUUCGUAUUUCCGAAAACAACAGCUAAAUAAGCAUAUGCCAGACAA
.----(((((.((((((.((.(((((((((((...))))))))).....)).)).)))))).........(((.....)))..)))))...... ( -18.00)
>DroSec_CAF1 10807 90 - 1
G----GGUACCUGGGAAAGCGAAAUGAAUUUAAUUUAAAUUCAUAUAACCUCGUAUUUCCGAAAACAACAGCUAAAUAAGCAUAUGCCAGACAA
.----((((..((((((.((((.(((((((((...)))))))))......)))).)))))).........(((.....)))...))))...... ( -19.30)
>DroEre_CAF1 10098 90 - 1
G----GGUAUACAGAAAAGCGAAAUGAAUUUAAUUUAAAUUCAUAUAACCUCGUAUUUCCGAAAACAACAGCUAAAUAAGCAUAUGCCAGACAA
.----(((((((.((((.((((.(((((((((...)))))))))......)))).)))).).........(((.....))).))))))...... ( -18.30)
>DroYak_CAF1 8089 94 - 1
AAAUAAGUACAUGGGAAAGCGAAAUGAAUUUAAUUUAAAUUCAUAUAACCCCGUAUUUCCGAAAACAACAGCUAAAUAAGCAUAUGCCAGACAA
......(((..((((((.(((..(((((((((...))))))))).......))).)))))).........(((.....)))...)))....... ( -13.60)
>consensus
G____GGUACACGGGAAAGCGAAAUGAAUUUAAUUUAAAUUCAUAUAACCUCGUAUUUCCGAAAACAACAGCUAAAUAAGCAUAUGCCAGACAA
.....((((..((((((.((((.(((((((((...)))))))))......)))).)))))).........(((.....)))...))))...... (-15.36 = -15.92 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:35 2006