Locus 5011

Sequence ID 3L_DroMel_CAF1
Location 13,763,660 – 13,763,765
Length 105
Max. P 0.623813
window7929

overview

Window 9

Location 13,763,660 – 13,763,765
Length 105
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.67
Mean single sequence MFE -36.05
Consensus MFE -29.98
Energy contribution -30.23
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.83
SVM decision value 0.18
SVM RNA-class probability 0.623813
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13763660 105 - 23771897
GCUGUGUGGGUGAUGGGUUGCAUG------------UAUCCCACACCACAUAGAA---GGGGGUUCCGGAGAGGCCGUGCACUUGAAACUAAAGGCUAAGUAGGCGCAUUCACACAAACA
..((((((((((.((((.((....------------)).))))))))........---..((.(((....))).))((((.(((.......)))(((.....))))))).)))))).... ( -30.80)
>DroSec_CAF1 10228 105 - 1
GCUGUGUGGGUGAUGGGUUGCAUG------------UAUCCUACCCCACAUAAAA---GGGGGUUCCGGAGAGGCCAUGCACUUGAAACUAAAGGCUAAGUAGGCGCAUUCACACAAACA
..((((((((((..((((.(((((------------(.(((.(((((.(......---))))))...)))...).)))))))))..........(((.....))).)))))))))).... ( -35.10)
>DroEre_CAF1 9501 105 - 1
GCUGUGUGGGUGAUGGGUUGCAUG------------UAUCCUACCCCACAUAAAA---GGGGGUUCCGGAGAGGCCGUGCACUUGAAACUAAAGGCUAAGUAGGCGCAUUCACACAAACA
..((((((((((..((((.(((((------------(.(((.(((((.(......---))))))...)))...).)))))))))..........(((.....))).)))))))))).... ( -34.70)
>DroYak_CAF1 7473 120 - 1
GCUGUGUGGGUGAUGGGUUGCAUGGGUUAUGUUGGGCAUCCUACCCCACAUAAAGAGGGGGGGUUCCGGAGAGGCCGUGCACUUGAAACUAAAGGCUAAGUAGGCGCAUUCACACAAACA
..((((((((((..((((.((((((.((...(((((.((((..((((.(.....).)))))))))))))..)).))))))))))..........(((.....))).)))))))))).... ( -43.60)
>consensus
GCUGUGUGGGUGAUGGGUUGCAUG____________UAUCCUACCCCACAUAAAA___GGGGGUUCCGGAGAGGCCGUGCACUUGAAACUAAAGGCUAAGUAGGCGCAUUCACACAAACA
..((((((((((...(.((((.................(((.(((((............)))))...)))..((((.................))))..)))).).)))))))))).... (-29.98 = -30.23 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:34 2006