| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,762,672 – 13,762,765 |
| Length | 93 |
| Max. P | 0.894354 |
| Location | 13,762,672 – 13,762,765 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 80.13 |
| Mean single sequence MFE | -19.46 |
| Consensus MFE | -14.44 |
| Energy contribution | -15.47 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.894354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13762672 93 + 23771897 AAAUUCCAUUGUUUUGGCUUUCGGUUUAGCCCGCAUAUAUCUUCU-CAUUU---CCCACCC-----------GCUAAAAUUCGGCAAACAUAAUGGAAUUUUCAUGUA----- ((((((((((((.((.(((.....((((((...............-.....---.......-----------))))))....))).)).)))))))))))).......----- ( -17.93) >DroGri_CAF1 17079 101 + 1 AUAAUGCAUUGUUUCGACUUGUUGUCUAGCCUCGAUG-AGCU---GCACCU---CCGACCAGUUUACAGCCUUCUUUUACUGAGCAAACAUAAUGGAAUUUUCAUGUA----- ....(((((.((((((...(((((..(((....((.(-.(((---(...((---......))....))))).)).....)))..).))))...))))))....)))))----- ( -13.70) >DroSec_CAF1 9228 93 + 1 AAAUUCCAUUGUUUUGGCUUUCCGUUUAGCCCGCAUAUAUCUUCU-CAUUU---CCCACCC-----------GCUGAAAUUCGGCAAACAUAAUGGAAUUUUCAUGUA----- ((((((((((((...((((........))))..............-.....---.......-----------((((.....))))....)))))))))))).......----- ( -21.10) >DroSim_CAF1 5796 100 + 1 AAAUUCCAUUGUUUUGGCUUUCCGUUUAGCCCGCAUAUAUCUUCU-CUCUUAUGCCCACCC-----------GCUGAAAUUCGGCAAACAUAAUGGAACUUU-AUGUGAUGAG ...(((((((((...((((........)))).(((((........-....)))))......-----------((((.....))))....)))))))))....-.......... ( -21.90) >DroEre_CAF1 8481 93 + 1 AAAUUCCAUUGUUUUGGCUUUUCGUUUAGCCCGCAUAUAUCUUCU-CAUUU---CCCACCC-----------GCUGAAAUUCGGCUAACAUAAUGGAAUUUCCAUGUA----- ((((((((((((.((((((.....((((((...............-.....---.......-----------))))))....)))))).)))))))))))).......----- ( -22.23) >DroYak_CAF1 6470 93 + 1 AAAUUCCAUUGUUUUGGCUUUUCGUUUAGCCCGCAUAUAUCUUCU-CACUU---CCCACCC-----------GCUGAAAUUGGGCAAACAUAAUGGAAUUUCCAUGUA----- ((((((((((((((((.((.....((((((...............-.....---.......-----------))))))...)).)))).)))))))))))).......----- ( -19.93) >consensus AAAUUCCAUUGUUUUGGCUUUCCGUUUAGCCCGCAUAUAUCUUCU_CACUU___CCCACCC___________GCUGAAAUUCGGCAAACAUAAUGGAAUUUUCAUGUA_____ ((((((((((((...((((........)))).........................................((((.....))))....))))))))))))............ (-14.44 = -15.47 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:31 2006