Locus 5008

Sequence ID 3L_DroMel_CAF1
Location 13,762,075 – 13,762,185
Length 110
Max. P 0.754907
window7925

overview

Window 5

Location 13,762,075 – 13,762,185
Length 110
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 92.01
Mean single sequence MFE -23.69
Consensus MFE -21.22
Energy contribution -21.62
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.90
SVM decision value 0.49
SVM RNA-class probability 0.754907
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13762075 110 - 23771897
AACUCACCAAGUCAGGAAGUCUGUCGACGUGAACGUCGUCAUCGUCAUCGUCAUCAUCACCCUCACCCUCCCCCAGUAGACGUCCUUAUAGUCCUUGCUACCCAA----CUCCC
.........(((.((((....((.(((((....))))).)).......((((..........................)))).........)))).)))......----..... ( -18.97)
>DroSec_CAF1 8628 110 - 1
AACUCAGCAAGUCAGGAAGUCUGUCGACGUGAACGUCGUCAUCGUCAUCGUCAUCAUCAACCUCACCCUCCCCCAGUAGACGUCCUUAUAGUCCAUGCUACCCGA----CUCCC
.........((((((((.(((((.(((((....))))).)..((....))...........................)))).))))..((((....))))...))----))... ( -22.30)
>DroSim_CAF1 5196 110 - 1
AACUCAGCAAGUCAGGAAGUCUGUCGACGUGAACGUCGUCAUCGUCAUCGUCAUCAUCAACCUCACCCUCCGCCAGUAGACGUCCUUAUAGUCCUUGCUACCCGA----CUCCC
.....((((((..((((.(((((.(((((....))))).)..((....))...........................)))).)))).......))))))......----..... ( -23.30)
>DroEre_CAF1 7881 112 - 1
AACUCAGCAAGUCAGGAAGUCUGUCGACGUGAACGUCGUCAUCGUCAUCGUCAUCAUCAACCUCACCC--CCCCAUUAGACGUCCUUAUAGUCCUUGCUACCCUUGCUGCUCCC
....(((((((..((((.(((((.(((((....))))).)..((....))..................--.......)))).))))..((((....))))..)))))))..... ( -27.80)
>DroYak_CAF1 5884 112 - 1
AACUCAGCAAGUCAGGAAGUCUGUCGACGUGAACGUCGUCAUCGUCAUCGUCAUCAUCAACCUCAUCC--CCCCAGCAGACGUCCUUAUAGUCCUUGCUACCCCUCUUUGGCCC
.....((((((..((((.(((((((((((....)))))....((....))..................--.....)))))).)))).......))))))...((.....))... ( -26.10)
>consensus
AACUCAGCAAGUCAGGAAGUCUGUCGACGUGAACGUCGUCAUCGUCAUCGUCAUCAUCAACCUCACCCUCCCCCAGUAGACGUCCUUAUAGUCCUUGCUACCCGA____CUCCC
.....((((((..((((.(((((.(((((....))))).)..((....))...........................)))).)))).......))))))............... (-21.22 = -21.62 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:30 2006