Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,760,491 – 13,760,590 |
Length | 99 |
Max. P | 0.966594 |
Location | 13,760,491 – 13,760,590 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 80.30 |
Mean single sequence MFE | -27.68 |
Consensus MFE | -16.18 |
Energy contribution | -19.86 |
Covariance contribution | 3.68 |
Combinations/Pair | 1.04 |
Mean z-score | -2.21 |
Structure conservation index | 0.58 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882525 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13760491 99 + 23771897 UAAGUCCCUUACCACCCGAUUCUUGGGCGCAGAGAGCGCAUUGUAGCAAUUACAGCUCUCUUGCCAAAUUUGCAAAUGCAAAUUGAUUUUGCGGAUGGA ...........(((.(((.......((((.(((((((....(((((...)))))))))))))))).(((((((....))))))).......))).))). ( -32.00) >DroSec_CAF1 7057 99 + 1 UAAGUCCCUUGCCACCCAAUUCUUGGCCGUAGAGAGCGCAUUGUAGCAAUUACAGCUCUCUUGCCAAAUUUGCAAAUGCAAAUUGAUUUUGCGGAUGGA ...........((((((((.((.((((...(((((((....(((((...)))))))))))).))))(((((((....)))))))))..))).)).))). ( -30.20) >DroSim_CAF1 3627 99 + 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGUUGCAAUUACAGCUCUCUUGCCAAAUUUGCAAAUGCAAAUGGGUUUUGCGGAGGGA .......................................................((((((.(((..((((((....)))))).))).....)))))). ( -14.70) >DroEre_CAF1 6216 99 + 1 UAAGUCCCUUACCACCCAAUUCUUGGGCGCAGGGAGCGCAUUGUAGCAAUUACAGCUCUCUUGCCAAAUUUGCAAAUGCAAAUUGAUUUUGCGGAUGGA ...........((((((((.((...((((.(((((((....(((((...)))))))))))))))).(((((((....)))))))))..))).)).))). ( -30.30) >DroYak_CAF1 3294 99 + 1 UAAGUCCCUUACCACCCAAUUCUUGGGCGCAGAGAGCGCAUUGUAGCAAUUACAGCUCUCUUGCCAAAUUUGCAAAUGCAAAUUGAUUUUGCGGAUGGA ...........((((((((.((...((((.(((((((....(((((...)))))))))))))))).(((((((....)))))))))..))).)).))). ( -31.20) >consensus UAAGUCCCUUACCACCCAAUUCUUGGGCGCAGAGAGCGCAUUGUAGCAAUUACAGCUCUCUUGCCAAAUUUGCAAAUGCAAAUUGAUUUUGCGGAUGGA ...........(((.((........((((.(((((((....(((((...)))))))))))))))).(((((((....)))))))........)).))). (-16.18 = -19.86 + 3.68)
Location | 13,760,491 – 13,760,590 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 80.30 |
Mean single sequence MFE | -28.24 |
Consensus MFE | -17.51 |
Energy contribution | -18.54 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.04 |
Mean z-score | -2.47 |
Structure conservation index | 0.62 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966594 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13760491 99 - 23771897 UCCAUCCGCAAAAUCAAUUUGCAUUUGCAAAUUUGGCAAGAGAGCUGUAAUUGCUACAAUGCGCUCUCUGCGCCCAAGAAUCGGGUGGUAAGGGACUUA .(((((((.......(((((((....))))))).(((.(((((((.(((.(((...)))))))))))))..))).......)))))))........... ( -33.30) >DroSec_CAF1 7057 99 - 1 UCCAUCCGCAAAAUCAAUUUGCAUUUGCAAAUUUGGCAAGAGAGCUGUAAUUGCUACAAUGCGCUCUCUACGGCCAAGAAUUGGGUGGCAAGGGACUUA .(((((((((((.....))))).........((((((.(((((((.(((.(((...)))))))))))))...))))))....))))))........... ( -33.00) >DroSim_CAF1 3627 99 - 1 UCCCUCCGCAAAACCCAUUUGCAUUUGCAAAUUUGGCAAGAGAGCUGUAAUUGCAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN .......(((((.....)))))..((((((...((((......))))...))))))........................................... ( -12.20) >DroEre_CAF1 6216 99 - 1 UCCAUCCGCAAAAUCAAUUUGCAUUUGCAAAUUUGGCAAGAGAGCUGUAAUUGCUACAAUGCGCUCCCUGCGCCCAAGAAUUGGGUGGUAAGGGACUUA ......((((.....(((((((....)))))))((((((...........))))))...)))).(((((.((((((.....))))))...))))).... ( -30.40) >DroYak_CAF1 3294 99 - 1 UCCAUCCGCAAAAUCAAUUUGCAUUUGCAAAUUUGGCAAGAGAGCUGUAAUUGCUACAAUGCGCUCUCUGCGCCCAAGAAUUGGGUGGUAAGGGACUUA (((..((((..(((((((((((....))))))).(((.(((((((.(((.(((...)))))))))))))..)))...).)))..))))....))).... ( -32.30) >consensus UCCAUCCGCAAAAUCAAUUUGCAUUUGCAAAUUUGGCAAGAGAGCUGUAAUUGCUACAAUGCGCUCUCUGCGCCCAAGAAUUGGGUGGUAAGGGACUUA .......((((....(((((((....))))))).(((......)))....))))..........(((((.((((((.....))))))...))))).... (-17.51 = -18.54 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:23 2006