Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,760,070 – 13,760,224 |
Length | 154 |
Max. P | 0.999867 |
Location | 13,760,070 – 13,760,184 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 97.99 |
Mean single sequence MFE | -31.16 |
Consensus MFE | -28.02 |
Energy contribution | -28.30 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.03 |
Mean z-score | -2.11 |
Structure conservation index | 0.90 |
SVM decision value | 2.22 |
SVM RNA-class probability | 0.990636 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13760070 114 + 23771897 AAUAAUUGAUGCCAGCUCUUGAAGAGGAAGCCCGUGGCUUGUGUUCUUUCUGAUC-CUUUUUAUGGUAUUAAGUUAUUAUGUGCUUAAACCUAAAUAUAAUGCCGCAGGCUUCAG ...............(((.....)))((((((.((((((((((((.....(((..-....))).(((.((((((........)))))))))..))))))).))))).)))))).. ( -31.20) >DroSec_CAF1 6636 114 + 1 AAUAAUUGAUGCCAGCUCUUGAAGAGGAAGCCCGUGGCUUGUGUUCCUUCUGAUC-CUUUUUAUGGUAUUAAGUUAUUAUGUGCUUAAACCUAAAUAUAAUGCCGCAGGCUUCAG ...............(((.....)))((((((.((((((((((((.....(((..-....))).(((.((((((........)))))))))..))))))).))))).)))))).. ( -31.20) >DroSim_CAF1 2769 114 + 1 AAUAAUUGAUGCCAGCUCUUGAAGAGGAAGCCCGUGGCUUGUGUUCUUUCUGAUC-CUUUUUAUGGUAUUAAGUUAUUAUGUGCUUAAACCUAAAUAUAAUGCCGCAGGCUUCAG ...............(((.....)))((((((.((((((((((((.....(((..-....))).(((.((((((........)))))))))..))))))).))))).)))))).. ( -31.20) >DroEre_CAF1 5799 114 + 1 AAUAAUUGAUGCCAGGUCUUGAAGAGGAAGACCGUGGCUUGUGUUCUUUCUGAUC-CUUUUUAUGGUAUUAAGUUAUUAUGUGCUUAAACCUAAAUAUAAUGCCGCCGGCUUCAG ......(((.(((.((((((.......))))))((((((((((((.....(((..-....))).(((.((((((........)))))))))..))))))).))))).))).))). ( -32.40) >DroYak_CAF1 2873 115 + 1 AAUAAUUGAUGCCAGUUCUUGAAGAGGAAGCCCGUGGCUUGUGUUCUUUCUGAUCCCUUUUUAUGGUAUUAAGUUAUUAUGUGCUUAAACCUAAAUAUAAUGCCGCAGGCUUCAG ...(((((....))))).........((((((.(((((((((((((.....))...........(((.((((((........)))))))))...)))))).))))).)))))).. ( -29.80) >consensus AAUAAUUGAUGCCAGCUCUUGAAGAGGAAGCCCGUGGCUUGUGUUCUUUCUGAUC_CUUUUUAUGGUAUUAAGUUAUUAUGUGCUUAAACCUAAAUAUAAUGCCGCAGGCUUCAG ...............(((.....)))((((((.(((((((((((((.....))...........(((.((((((........)))))))))...)))))).))))).)))))).. (-28.02 = -28.30 + 0.28)
Location | 13,760,070 – 13,760,184 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 97.99 |
Mean single sequence MFE | -25.14 |
Consensus MFE | -21.64 |
Energy contribution | -22.04 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.83 |
Structure conservation index | 0.86 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13760070 114 - 23771897 CUGAAGCCUGCGGCAUUAUAUUUAGGUUUAAGCACAUAAUAACUUAAUACCAUAAAAAG-GAUCAGAAAGAACACAAGCCACGGGCUUCCUCUUCAAGAGCUGGCAUCAAUUAUU ..((((((((.(((......((((((((((((..........))))).))).))))...-..((.....))......))).))))))))(((.....)))............... ( -25.40) >DroSec_CAF1 6636 114 - 1 CUGAAGCCUGCGGCAUUAUAUUUAGGUUUAAGCACAUAAUAACUUAAUACCAUAAAAAG-GAUCAGAAGGAACACAAGCCACGGGCUUCCUCUUCAAGAGCUGGCAUCAAUUAUU ..((((((((.(((......((((((((((((..........))))).))).))))..(-..((....))..)....))).))))))))(((.....)))............... ( -25.70) >DroSim_CAF1 2769 114 - 1 CUGAAGCCUGCGGCAUUAUAUUUAGGUUUAAGCACAUAAUAACUUAAUACCAUAAAAAG-GAUCAGAAAGAACACAAGCCACGGGCUUCCUCUUCAAGAGCUGGCAUCAAUUAUU ..((((((((.(((......((((((((((((..........))))).))).))))...-..((.....))......))).))))))))(((.....)))............... ( -25.40) >DroEre_CAF1 5799 114 - 1 CUGAAGCCGGCGGCAUUAUAUUUAGGUUUAAGCACAUAAUAACUUAAUACCAUAAAAAG-GAUCAGAAAGAACACAAGCCACGGUCUUCCUCUUCAAGACCUGGCAUCAAUUAUU ((((.(((...)))......((((((((((((..........))))).))).))))...-..))))...........((((.((((((.......)))))))))).......... ( -25.10) >DroYak_CAF1 2873 115 - 1 CUGAAGCCUGCGGCAUUAUAUUUAGGUUUAAGCACAUAAUAACUUAAUACCAUAAAAAGGGAUCAGAAAGAACACAAGCCACGGGCUUCCUCUUCAAGAACUGGCAUCAAUUAUU ..((((((((.(((......((((((((((((..........))))).))).))))......((.....))......))).)))))))).......................... ( -24.10) >consensus CUGAAGCCUGCGGCAUUAUAUUUAGGUUUAAGCACAUAAUAACUUAAUACCAUAAAAAG_GAUCAGAAAGAACACAAGCCACGGGCUUCCUCUUCAAGAGCUGGCAUCAAUUAUU ..((((((((.(((......((((((((((((..........))))).))).))))......((.....))......))).)))))))).......................... (-21.64 = -22.04 + 0.40)
Location | 13,760,106 – 13,760,224 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 98.65 |
Mean single sequence MFE | -28.60 |
Consensus MFE | -28.44 |
Energy contribution | -28.44 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.99 |
SVM decision value | 2.55 |
SVM RNA-class probability | 0.995221 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13760106 118 + 23771897 GCUUGUGUUCUUUCUGAUC-CUUUUUAUGGUAUUAAGUUAUUAUGUGCUUAAACCUAAAUAUAAUGCCGCAGGCUUCAGAUGUUGAACGCCAGCCGUGGCUGUGCUUUUAUUGUUUAUU ((..((((((..(((((..-...((((.(((.((((((........)))))))))))))......(((...))).)))))....))))))((((....)))).)).............. ( -29.00) >DroSec_CAF1 6672 118 + 1 GCUUGUGUUCCUUCUGAUC-CUUUUUAUGGUAUUAAGUUAUUAUGUGCUUAAACCUAAAUAUAAUGCCGCAGGCUUCAGAUGUUGAACGCCAGCCGUUGCUGUGCUUUUAUUGUUUAUU ((..((((((..(((((..-...((((.(((.((((((........)))))))))))))......(((...))).)))))....))))))((((....)))).)).............. ( -26.20) >DroSim_CAF1 2805 118 + 1 GCUUGUGUUCUUUCUGAUC-CUUUUUAUGGUAUUAAGUUAUUAUGUGCUUAAACCUAAAUAUAAUGCCGCAGGCUUCAGAUGUUGAACGCCAGCCGUGGCUGUGCUUUUAUUGUUUAUU ((..((((((..(((((..-...((((.(((.((((((........)))))))))))))......(((...))).)))))....))))))((((....)))).)).............. ( -29.00) >DroEre_CAF1 5835 118 + 1 GCUUGUGUUCUUUCUGAUC-CUUUUUAUGGUAUUAAGUUAUUAUGUGCUUAAACCUAAAUAUAAUGCCGCCGGCUUCAGAUGUUGAACGCCAGCCGUGGCUGUGCUUUUAUUGUUUAUU ((..((((((..(((((..-...((((.(((.((((((........)))))))))))))......(((...))).)))))....))))))((((....)))).)).............. ( -29.00) >DroYak_CAF1 2909 119 + 1 GCUUGUGUUCUUUCUGAUCCCUUUUUAUGGUAUUAAGUUAUUAUGUGCUUAAACCUAAAUAUAAUGCCGCAGGCUUCAGAUGUUGAACGCCAGCCGUGGCUGUGCUUUUAUUGUUUAUU ((..((((((..(((((..(((.....((((((((.(((..((.((......)).))))).)))))))).)))..)))))....))))))((((....)))).)).............. ( -29.80) >consensus GCUUGUGUUCUUUCUGAUC_CUUUUUAUGGUAUUAAGUUAUUAUGUGCUUAAACCUAAAUAUAAUGCCGCAGGCUUCAGAUGUUGAACGCCAGCCGUGGCUGUGCUUUUAUUGUUUAUU ((..((((((..(((((......((((.(((.((((((........)))))))))))))......(((...))).)))))....))))))((((....)))).)).............. (-28.44 = -28.44 + -0.00)
Location | 13,760,106 – 13,760,224 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 98.65 |
Mean single sequence MFE | -25.72 |
Consensus MFE | -25.72 |
Energy contribution | -25.72 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.81 |
Structure conservation index | 1.00 |
SVM decision value | 4.31 |
SVM RNA-class probability | 0.999867 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13760106 118 - 23771897 AAUAAACAAUAAAAGCACAGCCACGGCUGGCGUUCAACAUCUGAAGCCUGCGGCAUUAUAUUUAGGUUUAAGCACAUAAUAACUUAAUACCAUAAAAAG-GAUCAGAAAGAACACAAGC ..............((.((((....))))))((((....(((((.(((...)))......((((((((((((..........))))).))).))))...-..)))))..))))...... ( -25.80) >DroSec_CAF1 6672 118 - 1 AAUAAACAAUAAAAGCACAGCAACGGCUGGCGUUCAACAUCUGAAGCCUGCGGCAUUAUAUUUAGGUUUAAGCACAUAAUAACUUAAUACCAUAAAAAG-GAUCAGAAGGAACACAAGC ..............((.((((....))))))((((....(((((.(((...)))......((((((((((((..........))))).))).))))...-..)))))..))))...... ( -25.40) >DroSim_CAF1 2805 118 - 1 AAUAAACAAUAAAAGCACAGCCACGGCUGGCGUUCAACAUCUGAAGCCUGCGGCAUUAUAUUUAGGUUUAAGCACAUAAUAACUUAAUACCAUAAAAAG-GAUCAGAAAGAACACAAGC ..............((.((((....))))))((((....(((((.(((...)))......((((((((((((..........))))).))).))))...-..)))))..))))...... ( -25.80) >DroEre_CAF1 5835 118 - 1 AAUAAACAAUAAAAGCACAGCCACGGCUGGCGUUCAACAUCUGAAGCCGGCGGCAUUAUAUUUAGGUUUAAGCACAUAAUAACUUAAUACCAUAAAAAG-GAUCAGAAAGAACACAAGC ..............((.((((....))))))((((....(((((.(((...)))......((((((((((((..........))))).))).))))...-..)))))..))))...... ( -25.80) >DroYak_CAF1 2909 119 - 1 AAUAAACAAUAAAAGCACAGCCACGGCUGGCGUUCAACAUCUGAAGCCUGCGGCAUUAUAUUUAGGUUUAAGCACAUAAUAACUUAAUACCAUAAAAAGGGAUCAGAAAGAACACAAGC ..............((.((((....))))))((((....(((((.(((...)))......((((((((((((..........))))).))).))))......)))))..))))...... ( -25.80) >consensus AAUAAACAAUAAAAGCACAGCCACGGCUGGCGUUCAACAUCUGAAGCCUGCGGCAUUAUAUUUAGGUUUAAGCACAUAAUAACUUAAUACCAUAAAAAG_GAUCAGAAAGAACACAAGC ..............((.((((....))))))((((....(((((.(((...)))......((((((((((((..........))))).))).))))......)))))..))))...... (-25.72 = -25.72 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:21 2006