Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,758,626 – 13,758,717 |
Length | 91 |
Max. P | 0.860982 |
Location | 13,758,626 – 13,758,717 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 93.90 |
Mean single sequence MFE | -13.83 |
Consensus MFE | -13.16 |
Energy contribution | -13.00 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.07 |
Mean z-score | -1.25 |
Structure conservation index | 0.95 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860982 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13758626 91 - 23771897 GCCGCCACACUAUGUGAAUUGCUCAUUUUAAUUACUGGCAGCUGUUAUCCCCCACAGCACUUUCUGCUCCCCCAUCGCCCCAU-UCGUCCUU ((.((((......((((.....)))).........)))).(((((........))))).......))................-........ ( -13.46) >DroSec_CAF1 5190 92 - 1 GCCGCCACACUAUGUGAAUUGCUCAUGUUAAUUACUGGCAGCUGUUAUCCCCCACAGCACUUUCAGCUCCCCCAUUGCCCCAUUUCGUCCUU ((.((((....((((((.....)))))).......)))).(((((........))))).......))......................... ( -15.10) >DroSim_CAF1 1325 92 - 1 GCCGCCACACUAUGUGAAUUGCUCAUUUUAAUUACUGGCAGCUGUUAUCCCCCACAGCACUUUCAGCUCCCCCAUUGCCCCAUUUCGUCCUU ((.((((......((((.....)))).........)))).(((((........))))).......))......................... ( -13.66) >DroEre_CAF1 4421 90 - 1 GCCGCCACACUAUGUGAAUUGCUCAUUUUAAUUACUGGCAGCUGUUAGCCCCCACAGCACUUUCUGCACUCCUAUC-CGCCA-UUCGUCCUU ((.((((......((((.....)))).........)))).(((((........))))).......)).........-.....-......... ( -13.96) >DroYak_CAF1 1421 90 - 1 GCCGCCACACUAUGUGAAUUGCUCAUUUUAAUUACUGGCAGCUGUUAUCCCCCACAGCACUUUCUGUUCCCCCAUC-CCCCA-UUCGUCCUU ((((.........((((.....)))).........)))).(((((........)))))..................-.....-......... ( -12.97) >consensus GCCGCCACACUAUGUGAAUUGCUCAUUUUAAUUACUGGCAGCUGUUAUCCCCCACAGCACUUUCUGCUCCCCCAUCGCCCCAUUUCGUCCUU ((.((((......((((.....)))).........)))).(((((........))))).......))......................... (-13.16 = -13.00 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:12 2006