Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,758,416 – 13,758,528 |
Length | 112 |
Max. P | 0.999644 |
Location | 13,758,416 – 13,758,528 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 97.68 |
Mean single sequence MFE | -32.30 |
Consensus MFE | -30.56 |
Energy contribution | -30.96 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.54 |
Structure conservation index | 0.95 |
SVM decision value | 3.83 |
SVM RNA-class probability | 0.999644 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13758416 112 + 23771897 CCCGUGGCCUUUUGUCUGGGCAACUCAAAAGGCCACAGCAUGCAACACGUCAAAAGUUGAACGACAAGCGACCAGCUACAACAACCGAAGGGACAAGUGCAAGAGCAACAAC ...(((((((((((...((....))))))))))))).((.((((....(((...(((((..((.....))..)))))........(....))))...))))...))...... ( -34.60) >DroSec_CAF1 4980 112 + 1 CCCGUAGCCUUUUGUCUGGGCAACUCAAAAGGCCACAGCAUGCAACACGUCAAAAGUUGAACGACAAGCAGCCAGCUACAACAACCGAAGGGACAAGUGCAAGAGCAACUAC (((((.((((((((...((....)))))))))).))(((.(((....(((((.....)).)))....)))....)))............)))...(((((....)).))).. ( -28.10) >DroSim_CAF1 1116 112 + 1 CCCGUGGCCUUUUGUCUGGGCAACUCAAAAGGCCACAGCAUGCAACACGUCAAAAGUUGAACGACAAGCGACCAGCUACAACAACCGAAGGGACAAGUGCAAGAGCAACAAC ...(((((((((((...((....))))))))))))).((.((((....(((...(((((..((.....))..)))))........(....))))...))))...))...... ( -34.60) >DroEre_CAF1 4212 112 + 1 CCCGUGGCCUUUUGUCUGGCCAACUCAAAAGGCCACAGCAUGCAACACGUCAAAAGUUGAACGACAAGCGACCAGCUCCAACAACCGAAGGGACAAGUGCAAGAGCAACAAC ...(((((((((((...(.....).))))))))))).((.((((....(((...(((((..((.....))..)))))........(....))))...))))...))...... ( -31.80) >DroYak_CAF1 1210 112 + 1 CCCGUGGCCUUUUGUCUGGCCAACUCAAAAGGCCACAGCAUGCAACACGUCAAAAGUUGAACGACAAGCGACCAGCUACAACAACCGAAGGGACAAGUGCAAGAGCAACAAC ...(((((((((((...(.....).))))))))))).((.((((....(((...(((((..((.....))..)))))........(....))))...))))...))...... ( -32.40) >consensus CCCGUGGCCUUUUGUCUGGGCAACUCAAAAGGCCACAGCAUGCAACACGUCAAAAGUUGAACGACAAGCGACCAGCUACAACAACCGAAGGGACAAGUGCAAGAGCAACAAC ...(((((((((((...((....))))))))))))).((.((((....(((...(((((..((.....))..)))))........(....))))...))))...))...... (-30.56 = -30.96 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:11 2006