Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,756,404 – 13,756,566 |
Length | 162 |
Max. P | 0.988253 |
Location | 13,756,404 – 13,756,494 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 88.89 |
Mean single sequence MFE | -33.07 |
Consensus MFE | -26.47 |
Energy contribution | -26.47 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.95 |
Structure conservation index | 0.80 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908950 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13756404 90 + 23771897 GGCUGAAGGAGCAGAUAGGAUGGGAUUGAAUGGACCAGCCUAUCUAUUCUUCUAUCUCAAAAAGCGGG---GAGCCGAGGA------UGUCCUCCAGUU ((((((((((..(((((((.(((..(.....)..))).))))))).))))))..((((.......)))---)))))((((.------...))))..... ( -33.40) >DroSim_CAF1 175391 90 + 1 GGCUGAAGGAGCAGAUAGGAUGGGAUUGAAUGGACCAGCCUAUCUAUUCUUCUAUCUCAAAAAUCGGG---GGACCGAGGA------UGUCCUCCAGUU ((..((((((..(((((((.(((..(.....)..))).))))))).))))))..)).........(((---((((......------.))))))).... ( -32.50) >DroYak_CAF1 174366 99 + 1 GGCUGAAGGAGCAGAUAGGAUGGGAUUGAAUGGACCAGCCUAUCUAUUCUUCUAUCUCAAAAAGUGGGCGAGGAGUGAGGAGGAGUGAGUCCUCCAGUU .(((.....)))(((((((.(((..(.....)..))).)))))))(((((((...((((.....)))).)))))))..((((((.....)))))).... ( -33.30) >consensus GGCUGAAGGAGCAGAUAGGAUGGGAUUGAAUGGACCAGCCUAUCUAUUCUUCUAUCUCAAAAAGCGGG___GGACCGAGGA______UGUCCUCCAGUU ((..((((((..(((((((.(((..(.....)..))).))))))).))))))..))....................(((((........)))))..... (-26.47 = -26.47 + -0.00)
Location | 13,756,404 – 13,756,494 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 88.89 |
Mean single sequence MFE | -26.87 |
Consensus MFE | -24.83 |
Energy contribution | -24.94 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -3.12 |
Structure conservation index | 0.92 |
SVM decision value | 2.11 |
SVM RNA-class probability | 0.988253 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13756404 90 - 23771897 AACUGGAGGACA------UCCUCGGCUC---CCCGCUUUUUGAGAUAGAAGAAUAGAUAGGCUGGUCCAUUCAAUCCCAUCCUAUCUGCUCCUUCAGCC ..((((((((..------..((((((..---...)))....))).........((((((((.(((...........))).)))))))).)))))))).. ( -26.60) >DroSim_CAF1 175391 90 - 1 AACUGGAGGACA------UCCUCGGUCC---CCCGAUUUUUGAGAUAGAAGAAUAGAUAGGCUGGUCCAUUCAAUCCCAUCCUAUCUGCUCCUUCAGCC ..((((((((((------...((((...---.))))....))...........((((((((.(((...........))).)))))))).)))))))).. ( -27.30) >DroYak_CAF1 174366 99 - 1 AACUGGAGGACUCACUCCUCCUCACUCCUCGCCCACUUUUUGAGAUAGAAGAAUAGAUAGGCUGGUCCAUUCAAUCCCAUCCUAUCUGCUCCUUCAGCC ....((((((.....))))))......((((.........))))...((((..((((((((.(((...........))).))))))))...)))).... ( -26.70) >consensus AACUGGAGGACA______UCCUCGGUCC___CCCGCUUUUUGAGAUAGAAGAAUAGAUAGGCUGGUCCAUUCAAUCCCAUCCUAUCUGCUCCUUCAGCC ..((((((((..........(((((..............))))).........((((((((.(((...........))).)))))))).)))))))).. (-24.83 = -24.94 + 0.11)
Location | 13,756,465 – 13,756,566 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 89.47 |
Mean single sequence MFE | -27.70 |
Consensus MFE | -21.69 |
Energy contribution | -21.80 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.17 |
Structure conservation index | 0.78 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621003 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13756465 101 - 23771897 AAACUAAACACAAGUCGGCAAGA-ACAGUUUAUUGAAUAUGCAAAAUGUUGUGAACUGCAGCACAGUUGUGCAAACUGGAGGACA------UCCUCGGCUC---CCCGCUU ...........(((.(((.....-.((((((((..(((((.....))))))))))))).(((.(((((.....)))))((((...------.)))).))).---.)))))) ( -25.90) >DroSim_CAF1 175452 101 - 1 AAACUAAACACAAGUCGGCAAGA-ACAGUUUAUUGAAUAUGCAAAAUGUUGUGAACUGCAGCACAGUUGUGCAAACUGGAGGACA------UCCUCGGUCC---CCCGAUU ............((((((.....-.((((((((..(((((.....)))))))))))))..((((....))))..((((.(((...------.)))))))..---.)))))) ( -25.80) >DroYak_CAF1 174427 111 - 1 AAACUAAACACAAGUCGGCAAGAAACAGUUUAUUGAAUAUGCAAAAUGUUGUGAACUGCAGCACAGUUGUGCAAACUGGAGGACUCACUCCUCCUCACUCCUCGCCCACUU ...........((((.(((.((...((((((((..(((((.....)))))))))))))..((((....)))).....((((((.....))))))......)).))).)))) ( -31.40) >consensus AAACUAAACACAAGUCGGCAAGA_ACAGUUUAUUGAAUAUGCAAAAUGUUGUGAACUGCAGCACAGUUGUGCAAACUGGAGGACA______UCCUCGGUCC___CCCGCUU ...........((((.((.......((((((((..(((((.....)))))))))))))..((((....))))......(((((........)))))........)).)))) (-21.69 = -21.80 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:10 2006