| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 25,755 – 25,863 |
| Length | 108 |
| Max. P | 0.509471 |
| Location | 25,755 – 25,863 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.66 |
| Mean single sequence MFE | -22.39 |
| Consensus MFE | -4.56 |
| Energy contribution | -4.96 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.20 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509471 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 25755 108 + 23771897 UCUGCGCUA-UGCCUUUU-GUUAUUGGUUUAUUUUUGCACAUUGCAUAACUGUUCAUUAGCAAAGGCCUUA--AGCAACA----AUAGCAGAAAAAAACAA-C---AGCAAAAAAUUAAA ((((((((.-.((((((.-((((.(((........(((.....))).......))).))))))))))....--)))....----...))))).........-.---.............. ( -21.47) >DroSec_CAF1 15291 107 + 1 UCUGCGCUU-UGCUUUUU-GUUAUUGGUUUAUUUUUGCACACUGCAUAACUGUUCAUUUGUAAAGGCCGUU--AACAACA----UAACCAGAAA-AAACCA-C---AGCAAAAAAUUAAA ...((....-.))(((((-(((..((((((.((((((((....(((....))).....))))))))..(((--(......----))))......-))))))-.---))))))))...... ( -15.80) >DroSim_CAF1 16841 107 + 1 UCUGCGCUU-UGUUUUUU-GUUAUUGGUUUAUUUUUGCACACUGCAUAACUGUUCAUUAGUAAAGGCCGUU--AACAACA----UAACCAGAAA-AAACAA-C---AGCAAAAAAUUAAA .....((((-((((((((-((((.((((((.....(((.....)))..((((.....))))..)))))).)--))))...----........))-))))))-.---)))........... ( -19.70) >DroWil_CAF1 53869 104 + 1 UUU----UU-CAGUUUCU-GUUUUUGUUU--UUUUUGCACGUUGCAUAACUGUUCAUUAGCGAAGGCCGUUGAAACAACAA---UAGCCACAAA-CGACAAGC---AGCAACCA-GCAAC ...----..-..(((.((-((((((((((--..(((((.....(((....)))......)))))(((..(((......)))---..)))..)))-))).))))---)).)))..-..... ( -21.80) >DroMoj_CAF1 33924 104 + 1 GUUGCUCUUUUCUGUUUUCAUUAUC----CGCUUUGGCACAUUGCAUAACGGCUUAUUAGCGAAGGCUGUU----------UUGCAGCCACAACAAAGCGA-ACAGAGCAAAAC-AAAAA .(((((((.(((((....)).....----.((((((.....(((((.((((((((........))))))))----------.)))))......))))))))-).)))))))...-..... ( -33.20) >consensus UCUGCGCUU_UGCUUUUU_GUUAUUGGUUUAUUUUUGCACAUUGCAUAACUGUUCAUUAGCAAAGGCCGUU__AACAACA____UAACCAGAAA_AAACAA_C___AGCAAAAAAUUAAA ...............................(((((((.....((......))......((....))........................................)))))))...... ( -4.56 = -4.96 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:43 2006