Locus 4999

Sequence ID 3L_DroMel_CAF1
Location 13,755,978 – 13,756,078
Length 100
Max. P 0.530669
window7901

overview

Window 1

Location 13,755,978 – 13,756,078
Length 100
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 89.16
Mean single sequence MFE -31.70
Consensus MFE -26.53
Energy contribution -26.87
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.84
SVM decision value -0.01
SVM RNA-class probability 0.530669
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13755978 100 - 23771897
UUUGUUCUCUGCCUCUGCCGCAUUGUUUUGCCA----------------GCUGGAAACGGAAGGAGGCAGCAACUCUUCCUGUUGCAUAAUCAAGAGUUGUUUCAUUAAAUCGAGU
......((((((((((...(((......)))..----------------.(((....)))..)))))))(((((((((..(........)..)))))))))...........))). ( -29.10)
>DroSim_CAF1 174975 100 - 1
UUUGUUCUCUGCCUCUGCCGCAUUGUUUUGCCA----------------GCUGGAGACGGAAGGAGGCAGCAACUCUUCCUGUUGCAUAAUCAAGAGUUGUUUCAUUAAAUCGAGU
......((((((((((...(((......)))..----------------.(((....)))..)))))))(((((((((..(........)..)))))))))...........))). ( -29.10)
>DroYak_CAF1 173937 116 - 1
UUUGUUCUCUGGCUCUGCCGCAUUGUUUUGCCAGCUCUCCAGCUCUCCAGCUGGAGACGGAAGGAGGCAGCAACUCUUCCUGUUGCAUAAUCAAGAGUUGUUUCAUUAAAUCGAGU
......(((((.((((.(((((......)))..(.(((((((((....))))))))))))..)))).))(((((((((..(........)..)))))))))...........))). ( -36.90)
>consensus
UUUGUUCUCUGCCUCUGCCGCAUUGUUUUGCCA________________GCUGGAGACGGAAGGAGGCAGCAACUCUUCCUGUUGCAUAAUCAAGAGUUGUUUCAUUAAAUCGAGU
......((((((((((...(((......)))...................(((....)))..)))))))(((((((((..(........)..)))))))))...........))). (-26.53 = -26.87 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:07 2006