Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,754,600 – 13,754,693 |
Length | 93 |
Max. P | 0.981980 |
Location | 13,754,600 – 13,754,693 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 97.85 |
Mean single sequence MFE | -22.97 |
Consensus MFE | -22.19 |
Energy contribution | -21.97 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.90 |
Structure conservation index | 0.97 |
SVM decision value | 1.90 |
SVM RNA-class probability | 0.981980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13754600 93 + 23771897 AACACAAAUUUUUGCUUUUUUCUAUGCCGAAACAAAGUUUGGGUGAAUAAUGAAAAGAGGAGUGGCACCCAAAAAGGUGUGCUAUAAAAUCAA ..............((((((((...(((.((((...)))).))).......))))))))..(((((((((.....)).)))))))........ ( -22.60) >DroSim_CAF1 173595 93 + 1 AACACAAAUUUUUGCUUUUUUCUAUGCCGAAACAAAGUUUGGGUGAAUAAUGAAAAGAGGAGUGGCACCCAAAAAGGUGUGCUAUAAAAUCAA ..............((((((((...(((.((((...)))).))).......))))))))..(((((((((.....)).)))))))........ ( -22.60) >DroYak_CAF1 172582 92 + 1 AACACAAAUUUUUGCUUUUUUCUAUGCCGAAACAAAGUUUGGGUGAAUAAUGAAAAGAGGAGUGGCAUCCGA-AAGGUGUGCUAUAAAAUCAA ..............((((((((...(((.((((...)))).))).......))))))))..(((((((((..-..)).)))))))........ ( -23.70) >consensus AACACAAAUUUUUGCUUUUUUCUAUGCCGAAACAAAGUUUGGGUGAAUAAUGAAAAGAGGAGUGGCACCCAAAAAGGUGUGCUAUAAAAUCAA ..............((((((((...(((.((((...)))).))).......))))))))..(((((((((.....)).)))))))........ (-22.19 = -21.97 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:04 2006