Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,751,861 – 13,751,952 |
Length | 91 |
Max. P | 0.999242 |
Location | 13,751,861 – 13,751,952 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 96.26 |
Mean single sequence MFE | -33.14 |
Consensus MFE | -28.80 |
Energy contribution | -29.44 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.07 |
Mean z-score | -2.99 |
Structure conservation index | 0.87 |
SVM decision value | 3.46 |
SVM RNA-class probability | 0.999242 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13751861 91 + 23771897 AUUUUCUGUGACUAAUCUGGCCAGGCAAUUGCUGCAGUUGCAUGUGCAGCUUGUGCGAUUGCAGAAGUUGACCCGAUGGGCUUGAUAUUGU ..............(((.((((.(((((((.(((((((((((((.......))))))))))))).))))).)).....)))).)))..... ( -31.80) >DroSec_CAF1 158599 91 + 1 AUUUUCUGUGACUAAUCUGGCCCGGCAAUUGCUGCAGUUGCAUGUGCAGCUUGUGCGAUUGCAGAAGUUGACCCGAUGGGCUUGAUAUUGU ..............(((.((((((((((((.(((((((((((((.......))))))))))))).))))).))....))))).)))..... ( -34.40) >DroSim_CAF1 170836 91 + 1 AUUUUCUGUGACUAAUCUGGCCCGGCAAUUGCUGCAGUUGCAUGUGCAGCUUGUGCGAUUGCAGAAGUUGACCCGAUGGGCUUGAUAUUGU ..............(((.((((((((((((.(((((((((((((.......))))))))))))).))))).))....))))).)))..... ( -34.40) >DroEre_CAF1 165454 91 + 1 AUUUUCUGUGACUAAUUUGGCUCGGCAAUUGCUGCAGUUGCAUGUGCAGCUUGUGCGAUUGCAGAAGCUGACCCGAUGGGCUUGAUAUUGU ....((...(.((...((((.(((((.....(((((((((((((.......)))))))))))))..))))).))))..)))..))...... ( -29.40) >DroYak_CAF1 169796 91 + 1 AUUUUCUGUGACUAAUUGGGCUCGGCAAUUGCUGCAGUUGCAUGUGCAGCUUGUGCGAUUGCAGAAGCUGACCCGAUGCACUUGAUAUUGU ....((.(((....((((((.(((((.....(((((((((((((.......)))))))))))))..))))))))))).)))..))...... ( -35.70) >consensus AUUUUCUGUGACUAAUCUGGCCCGGCAAUUGCUGCAGUUGCAUGUGCAGCUUGUGCGAUUGCAGAAGUUGACCCGAUGGGCUUGAUAUUGU ..............(((.((((((((((((.(((((((((((((.......))))))))))))).))))).))....))))).)))..... (-28.80 = -29.44 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:57 2006