Locus 4993

Sequence ID 3L_DroMel_CAF1
Location 13,751,146 – 13,751,252
Length 106
Max. P 0.805908
window7888

overview

Window 8

Location 13,751,146 – 13,751,252
Length 106
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 88.69
Mean single sequence MFE -25.60
Consensus MFE -20.94
Energy contribution -21.74
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.82
SVM decision value 0.63
SVM RNA-class probability 0.805908
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13751146 106 - 23771897
CACAUUCAGAGCGGCACCCCCU-UUCAGAAACGAGUAUAUAUGUAUAUACACAUGCGAAAUUGCGCUUUUCUCCCAUUCGGUGUUUCCCUCUAUUUCUGGUUGUGGA--------
((((..(((((..(((((....-...(((((...((((((....))))))....(((......))).))))).......)))))..)........))))..))))..-------- ( -24.04)
>DroSec_CAF1 157894 106 - 1
CACAUUCAGAGCGCCACCCUCU-UUCAGAAACGAGUAUAUAUGUAUAUACACAUGCGAAAUUGCGCUUUUCUCCCAUUCGGUGUUUCCCUCUAUUUCUGGAUGUGGA--------
(((((((((((((((.......-...........((((((....))))))....(((......))).............)))))...........))))))))))..-------- ( -26.00)
>DroSim_CAF1 170136 106 - 1
CACAUUCAGAGCGCCACCCUCU-UUCAGAAACGAGUAUAUAUGUAUAUACACAUGCGAAAUUGCGCUUUUCUCCCAUUCGGUGUUUCCCUCUAUUUCUGGAUGUGGA--------
(((((((((((((((.......-...........((((((....))))))....(((......))).............)))))...........))))))))))..-------- ( -26.00)
>DroEre_CAF1 164759 98 - 1
CACAUUCAGAGCGCCUCCCCCU-UUCCGAAACGAGUAU--------AUACUCAUGCGAAAUUGCGCUUUUCUCCCAUUCGGUGUUUCCCUCUAUUUCUGGAUGUGGA--------
(((((((((((...........-..(((((..((((..--------..))))..(((......)))..........))))).............)))))))))))..-------- ( -26.77)
>DroYak_CAF1 169094 107 - 1
CACAUUCAGAGCGACUCCCCCUGUUGAGAAACGAGUAU--------AUACACAUGCGAAAUUGCGCUUUUCUCCCAUUCGGUGUUUCCCUCUAUUUCUGGAUGUGGCUAUGGCUC
(((((((((((((((.......)))).((((((.....--------........(((......))).......((....)))))))).......)))))))))))((....)).. ( -25.20)
>consensus
CACAUUCAGAGCGCCACCCCCU_UUCAGAAACGAGUAUAUAUGUAUAUACACAUGCGAAAUUGCGCUUUUCUCCCAUUCGGUGUUUCCCUCUAUUUCUGGAUGUGGA________
(((((((((((((((...................((((((....))))))....(((......))).............)))))...........)))))))))).......... (-20.94 = -21.74 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:56 2006