Locus 499

Sequence ID 3L_DroMel_CAF1
Location 1,401,769 – 1,401,863
Length 94
Max. P 0.719052
window749

overview

Window 9

Location 1,401,769 – 1,401,863
Length 94
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 64.69
Mean single sequence MFE -32.78
Consensus MFE -11.82
Energy contribution -14.35
Covariance contribution 2.53
Combinations/Pair 1.20
Mean z-score -1.80
Structure conservation index 0.36
SVM decision value 0.39
SVM RNA-class probability 0.719052
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1401769 94 + 23771897
UGCCUCUGGAUGCCUGGAGUGCCAACCCGUGCCGGGCGGCCUGUUGAAAUAUCCAUCAGCUAAUGCCGCCAUAUGGGCGA-------CUUGGAGGGUACAU
....((..(....)..))(((((..((..((((.((((((..(((((........)))))....)))))).....)))).-------...))..))))).. ( -35.50)
>DroPse_CAF1 84350 94 + 1
GGC---AGGAUGCCGGGGAUGCCAACUCGUGCCAGUCGGGCUGUUGAAAA---CAGUCCUAAAUGCCGCCAUNNNNNNNNNNNNNNNNNNNNNNNNNNNN-
(((---(.(((((((((........)))).))..)))(((((((.....)---))))))....)))).................................- ( -24.30)
>DroSec_CAF1 56691 80 + 1
UGCCUCUGGAUGCCUGGAGUGCCAACCCGUGCCGGGCGGCCUGUUGAAAUAUACAUCAGCUAAUGCCGCCAUAUGGGCU--------------------A-
.(((((..(....)..))).))...((((((...((((((..(((((........)))))....)))))).))))))..--------------------.- ( -33.10)
>DroSim_CAF1 52813 100 + 1
UGCCUCUGGAUGCCUGGAGUGCCAACCCGUGCCGGGCGGCCUGUUGAAAUAUCCAUCAGCUAAUGCCGCCAUAUGGGCGACCGAGCACUUGGAGGGCACA-
....((..(....)..))(((((..((.(((((.((((((..(((((........)))))....))))))....((....))).))))..))..))))).- ( -42.30)
>DroYak_CAF1 60160 90 + 1
U----------GCCUGGAGUGCCAACCCGUGCCGAGCGGCCUGUUGAAAUAUCCAUCGGCUAAUGCCGCCAUAUGGGAGACCCAGCACUUGGAGGGCAAA-
(----------((((.((((((...((((((..(.(((((..(((((........)))))....)))))).)))))).......))))))...)))))..- ( -33.90)
>DroPer_CAF1 85729 76 + 1
GGC---AGGAUGCCUGGGAUGCCAACUCGUGCCAGUCGGGCUGUUGAAAA---CAGUCCUAAAUGCCGCCAUUUGGACUGGA-------------------
(((---.....)))(((....))).......(((((((((((((.....)---))))))((((((....)))))))))))).------------------- ( -27.60)
>consensus
UGC___UGGAUGCCUGGAGUGCCAACCCGUGCCGGGCGGCCUGUUGAAAUAUCCAUCAGCUAAUGCCGCCAUAUGGGCGA___________________A_
..............(((....))).((((((...((((((..(((((........)))))....)))))).))))))........................ (-11.82 = -14.35 +   2.53) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:36 2006