Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,401,769 – 1,401,863 |
Length | 94 |
Max. P | 0.719052 |
Location | 1,401,769 – 1,401,863 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 64.69 |
Mean single sequence MFE | -32.78 |
Consensus MFE | -11.82 |
Energy contribution | -14.35 |
Covariance contribution | 2.53 |
Combinations/Pair | 1.20 |
Mean z-score | -1.80 |
Structure conservation index | 0.36 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.719052 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1401769 94 + 23771897 UGCCUCUGGAUGCCUGGAGUGCCAACCCGUGCCGGGCGGCCUGUUGAAAUAUCCAUCAGCUAAUGCCGCCAUAUGGGCGA-------CUUGGAGGGUACAU ....((..(....)..))(((((..((..((((.((((((..(((((........)))))....)))))).....)))).-------...))..))))).. ( -35.50) >DroPse_CAF1 84350 94 + 1 GGC---AGGAUGCCGGGGAUGCCAACUCGUGCCAGUCGGGCUGUUGAAAA---CAGUCCUAAAUGCCGCCAUNNNNNNNNNNNNNNNNNNNNNNNNNNNN- (((---(.(((((((((........)))).))..)))(((((((.....)---))))))....)))).................................- ( -24.30) >DroSec_CAF1 56691 80 + 1 UGCCUCUGGAUGCCUGGAGUGCCAACCCGUGCCGGGCGGCCUGUUGAAAUAUACAUCAGCUAAUGCCGCCAUAUGGGCU--------------------A- .(((((..(....)..))).))...((((((...((((((..(((((........)))))....)))))).))))))..--------------------.- ( -33.10) >DroSim_CAF1 52813 100 + 1 UGCCUCUGGAUGCCUGGAGUGCCAACCCGUGCCGGGCGGCCUGUUGAAAUAUCCAUCAGCUAAUGCCGCCAUAUGGGCGACCGAGCACUUGGAGGGCACA- ....((..(....)..))(((((..((.(((((.((((((..(((((........)))))....))))))....((....))).))))..))..))))).- ( -42.30) >DroYak_CAF1 60160 90 + 1 U----------GCCUGGAGUGCCAACCCGUGCCGAGCGGCCUGUUGAAAUAUCCAUCGGCUAAUGCCGCCAUAUGGGAGACCCAGCACUUGGAGGGCAAA- (----------((((.((((((...((((((..(.(((((..(((((........)))))....)))))).)))))).......))))))...)))))..- ( -33.90) >DroPer_CAF1 85729 76 + 1 GGC---AGGAUGCCUGGGAUGCCAACUCGUGCCAGUCGGGCUGUUGAAAA---CAGUCCUAAAUGCCGCCAUUUGGACUGGA------------------- (((---.....)))(((....))).......(((((((((((((.....)---))))))((((((....)))))))))))).------------------- ( -27.60) >consensus UGC___UGGAUGCCUGGAGUGCCAACCCGUGCCGGGCGGCCUGUUGAAAUAUCCAUCAGCUAAUGCCGCCAUAUGGGCGA___________________A_ ..............(((....))).((((((...((((((..(((((........)))))....)))))).))))))........................ (-11.82 = -14.35 + 2.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:36 2006