Locus 4989

Sequence ID 3L_DroMel_CAF1
Location 13,748,484 – 13,748,576
Length 92
Max. P 0.995481
window7880

overview

Window 0

Location 13,748,484 – 13,748,576
Length 92
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 90.15
Mean single sequence MFE -21.74
Consensus MFE -18.18
Energy contribution -18.14
Covariance contribution -0.04
Combinations/Pair 1.05
Mean z-score -2.45
Structure conservation index 0.84
SVM decision value 2.58
SVM RNA-class probability 0.995481
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13748484 92 + 23771897
UAGAAUUAAAAUUUAAGUUCUCGUCAUCCUGGACAGCUUCCAAAAGGAAGGAGGAAAAA----------AAAACUCCAGCACACGCAAACCAGGCAGCUGCA
.((((((........)))))).((...(((((...((((((....))))((((......----------....)))).......))...)))))..)).... ( -20.70)
>DroSec_CAF1 155210 90 + 1
UAGAAUUAAAAUGUAAGUUCUCGUCAUCCUGGACAGCUUCCAAAAGGAAGGAGGAAA------------AAAACUCCAGCACACGCAAUCCAGGCAGCUGCA
.((((((........)))))).((...((((((..((((((....))))((((....------------....)))).......))..))))))..)).... ( -24.20)
>DroSim_CAF1 167010 87 + 1
UAGAAUUAA-AUUUAAGUUCUCGUCAUCCUGGACAGCUUCCAAAA-GAAGGAGGAAA-------------AAACUCCAGCACACGCAAUCCAGGCAGCUGCA
.((((((..-.....)))))).((...((((((..(((((.....-)))((((....-------------...)))).......))..))))))..)).... ( -19.80)
>DroEre_CAF1 162085 89 + 1
UAGAAUUAAAAUUUAAGUUCUCGUCAUCCUGGACAGCUUCCAAAAGGAAGGAAGAA-------------AAAACUCCAGCACACGCAAUCCAGGCAGCUGCA
.((((((........)))))).((...((((((..((((((....))))(((....-------------.....))).......))..))))))..)).... ( -19.40)
>DroYak_CAF1 166362 102 + 1
UAGAAUUAAAAUUUAAGUUCUCGUCAUCCUGGACAGCUUCCAAAGGGAAGGAAGCAAAAAAAAAAAAAGAAAACUGCAGCACACGCAAUCCAGGCAGCUGCA
...............((((.(((((......))).((((((........)))))).............)).))))(((((...(........)...))))). ( -24.60)
>consensus
UAGAAUUAAAAUUUAAGUUCUCGUCAUCCUGGACAGCUUCCAAAAGGAAGGAGGAAA____________AAAACUCCAGCACACGCAAUCCAGGCAGCUGCA
.((((((........)))))).((...((((((...(((((........)))))........................((....))..))))))..)).... (-18.18 = -18.14 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:48 2006