Locus 4987

Sequence ID 3L_DroMel_CAF1
Location 13,747,709 – 13,747,803
Length 94
Max. P 0.526214
window7874

overview

Window 4

Location 13,747,709 – 13,747,803
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 96.57
Mean single sequence MFE -12.24
Consensus MFE -9.80
Energy contribution -9.64
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -1.66
Structure conservation index 0.80
SVM decision value -0.01
SVM RNA-class probability 0.526214
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13747709 94 - 23771897
GAAAAAUGUUGAUUAAAUAUGCAAACACGCAGACAGUUUAGUUAAAAAUGAAAAAACUAAACGCAAAGGUAAAGUAAACCUAAAAGCCAUAUAA
................((((((.............((((((((...........))))))))....((((.......))))....).))))).. ( -12.00)
>DroSec_CAF1 154453 93 - 1
GAAAAAUGUUGAUUAAAUAUGCAAACACGCAGACAGUUUAGUUAA-AAUGAAAAAACUAAACGCAAAGGUAAAGUUAACUUAAAAGCCCUAUAA
.......(((((((.....(((......)))....((((((((..-........))))))))..........)))))))............... ( -13.10)
>DroSim_CAF1 166096 93 - 1
GAAAAAUGUUGAUUAAAUAUGCAAACACGCAGACAGUUUAGUUAA-AAUGAAAAAACUAAACGCAAAGGUAAAGUUAACUUAAAAGCCCUAUAA
.......(((((((.....(((......)))....((((((((..-........))))))))..........)))))))............... ( -13.10)
>DroEre_CAF1 161314 93 - 1
GAAAAAUGUUGAUUAAAUAUGCAAACACGCAGACAGUUUAGUUAA-AAUGAAAAAACUAAACGCAAAGGUAAAGCAAACUUAAAAGCUCUAUAA
......(((..........(((......)))....((((((((..-........)))))))))))...(((.(((..........))).))).. ( -11.20)
>DroYak_CAF1 165591 93 - 1
GAAAAAUGUUGAUUAAAUAUGCAAACACGCAGACAGUUUAGUUAA-AAUGAAAAAACUAAACGCGAAGGUAAAGCAAACUUAAAAGCCCUAUAA
.......(((..((((.(.(((.............((((((((..-........))))))))((....))...))).).)))).)))....... ( -11.80)
>consensus
GAAAAAUGUUGAUUAAAUAUGCAAACACGCAGACAGUUUAGUUAA_AAUGAAAAAACUAAACGCAAAGGUAAAGUAAACUUAAAAGCCCUAUAA
...................(((......)))....((((((((...........))))))))((..((((.......))))....))....... ( -9.80 =  -9.64 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:43 2006