Locus 4985

Sequence ID 3L_DroMel_CAF1
Location 13,745,795 – 13,745,915
Length 120
Max. P 0.587352
window7871

overview

Window 1

Location 13,745,795 – 13,745,915
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.67
Mean single sequence MFE -26.58
Consensus MFE -23.50
Energy contribution -23.90
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.88
SVM decision value 0.11
SVM RNA-class probability 0.587352
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13745795 120 - 23771897
AAGGGGAAGUUAGAAAAACGAACAUUGAUUGAAUGCCAAAUCACUUAACCCAAUUGAAAGCCAUUGGCAACCAUUUGGCAAUGGGAAAGCAGGAAGGAAGGAAAAAGCGAUUCUUGCCAU
..(((...(((.....)))......(((((........))))).....))).........((((((.(((....))).))))))....(((((((...............)))))))... ( -25.46)
>DroSec_CAF1 152564 120 - 1
AAGGGGAAGUUAGAAAAACGAACAUUGAUUGAAUGCCAAAUCACUUAACCCAAUUGAAAGCCAUUGGCAACCAUUUGGCAAUGGGAAAGCAGGAAGGAAGGAAAAAGCGAUUCUUGCCAU
..(((...(((.....)))......(((((........))))).....))).........((((((.(((....))).))))))....(((((((...............)))))))... ( -25.46)
>DroSim_CAF1 163697 120 - 1
AAGGGGAAGUUAGAAAAACGAACAUUGAUUGAAUGCCAAAUCACUUAACCCAAUUGAAAGCCAUUGGCAACCAUUUGGCAAUGGGAAAGCAGGAAGGAAGGAAAAAGCGAUUCUUGCCAU
..(((...(((.....)))......(((((........))))).....))).........((((((.(((....))).))))))....(((((((...............)))))))... ( -25.46)
>DroEre_CAF1 159407 120 - 1
AAGGGGAAGUUAGAAAAACGAACAUUGAUUGAAUGCCAAAUCACUUAACCCAAUUGAAAGCCAUUGGCAACCAUUUGGCAUUGGGAAAGCAGGAAGGAAGGAAAAAGCGAUUCUUGCCAU
.(((....(((.....)))......(((((........))))))))..((((((.....((((.(((...)))..))))))))))...(((((((...............)))))))... ( -23.06)
>DroYak_CAF1 163601 119 - 1
AAGG-GAAGUUAGAAAAACGAACAGUGAUUGAAUGCCAAAUCACUUAACCCAAUUGAAAGCCAUUGGCAACCAUUUGGCAAUGGGAAGGCAGGAAGGAAGGAAAAAGCGAUUCUUGCCAU
..((-(..(((.....)))....(((((((........)))))))...))).........((((((.(((....))).))))))...((((((((...............)))))))).. ( -33.46)
>consensus
AAGGGGAAGUUAGAAAAACGAACAUUGAUUGAAUGCCAAAUCACUUAACCCAAUUGAAAGCCAUUGGCAACCAUUUGGCAAUGGGAAAGCAGGAAGGAAGGAAAAAGCGAUUCUUGCCAU
..(((...(((.....)))......(((((........))))).....))).........((((((.(((....))).))))))....(((((((...............)))))))... (-23.50 = -23.90 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:40 2006